1IPA


Conserved Protein Domain Family
SpoU_sub_bind

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pfam08032: SpoU_sub_bind 
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RNA 2'-O ribose methyltransferase substrate binding
This domain is a RNA 2'-O ribose methyltransferase substrate binding domain.
Statistics
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PSSM-Id: 311816
View PSSM: pfam08032
Aligned: 98 rows
Threshold Bit Score: 43.3753
Threshold Setting Gi: 81790698
Created: 25-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1IPA_A       30 LIEGAREIERALQA---G-IE---LEQA-LVWEGGLNPEEQQVYAALgRVG--RLALLEVSEAVLKKLSV-RDNPAGLIA 98
gi 81611504  41 LVEGAQAVREALAW-----PG---KVNL-LATSDPARDA--EHVEVA-TCR--GVRVVVLTDEDVNALSD-TVTSQGIFA 105
gi 81391219  38 LLEGPQAVAEALAF---R-SEl--LVEL-YATPTALERH-QDIAQAA-AAA--GTQVEFVTEQVLGTIAD-TVTPQGFVA 105
gi 81716548  57 LAEGPQAVREAAAH---RaADaatLVEL-FATAE-AAERYADIIGEA-RDA--GARVHLADEAVIADIST-TVTPQGLVG 127
gi 81535641  33 LAEGLKIVIEAIDC---GhAP---KIVM-YGPDAADHPMLKKAVAAC-LKA--GGEVIEVNREILEKVSR-RDNPQAVVA 101
gi 81790698  33 LAEGLRTVSELLQSlsdP-SM---LHAL-VFDEKAAGQLDGLERFAG--------KAWLAGPNEFKRLAQtTSP-QGVVA 98
gi 81538312  29 LIEGFHLLEEALKA---G-RS---IKQI-FVEENKLTKL--TEMIGS-EKLltDLSVNLVSKEVLKSLAD-SESPQGLIA 96
gi 3915481   38 LLEGTHLLEVALAQg-kG-FNhgcFTAM-WQEKN-------PVLADR-LMAq-SVHSYLVSGEVLAKMAS-TVNPDGVVA 104
gi 81773340  42 LLEGTHLLEEACAM---D-YP---LEVV-CCTPEWEANH-TALWDDA-CSR--CDRYEIVSEEVLQAIAT-TVQPDGVVA 108
gi 81711148  29 LVEGTHPVAAALAG---GwELefvCATEaWVGEH------PAMHTAL-SGR--AGRYETVAPAVIEALAD-TVHPSGVVA 95

                ....*.
1IPA_A       99 LARMPE 104
gi 81611504 106 VCRQVT 111
gi 81391219 106 VARQFP 111
gi 81716548 128 ICRFLD 133
gi 81535641 102 VFKQVF 107
gi 81790698  99 AFRKPE 104
gi 81538312  97 EVTKIE 102
gi 3915481  105 TLTMDQ 110
gi 81773340 109 TAKRSE 114
gi 81711148  96 AVRRRA 101
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