2NUP


Conserved Protein Domain Family
Sec23_BS

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pfam08033: Sec23_BS 
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Sec23/Sec24 beta-sandwich domain
Statistics
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PSSM-Id: 336908
View PSSM: pfam08033
Aligned: 140 rows
Threshold Bit Score: 58.3083
Threshold Setting Gi: 123492738
Created: 28-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2NUP_A       405 GFGGTLEIKTSREIKISGAIGPCVSL--------N---S-------KGPcvseneigtggtcqWKICGLSPTTTLAIYFE 466
gi 121958603 364 KYCYSIEVYCSKEIKPRSCIGHVTTSenk--egySsllSlpeefgvPGNk-------------FKTSTVDPHSSFVFLFD 428
gi 75275798  510 GSHGLFEIRCSDDMLVTQVIGPGEEA--------Sp--DshetfkhDTSf------------cIQMHSVEETQSFSVSME 567
gi 74832374  579 GFGVKLHVHTSADTLVSGVLGPCVAAektsgtkaHrasIspieigvGGTt------------dWRVSTIDQGTTYTVVFD 646
gi 122022439 590 AFGVKFGVHTSVDTLVCGVLGPCLVDekankanpNrvssp-iqigvGGTt------------nWCVSTMDQAVTYTFIFD 656
gi 75036127  415 GFAVRMEVNTSVGTLLRGALGPCNVDveankrgpTrltsp-levgaGGTt------------rWCVSYLDKGMTLSFLFD 481
gi 122016926 384 GLNVTMDVITSTTWKVMGVIGQCVGTgk----ksSs--VaeyevgmGGTc------------qWTACMMDCTTNFAIYFD 445
gi 122112116 384 ALNVTMDIITSPSWKVMGVIGQCVGTgk----ksSs--VadseigmGGTc------------qWTACMMDSTTNFAIYFD 445
gi 123492738 379 GSEAIVTINGSSHLNVTGMIGCGIANppv---nnFf--SinnkvglSGTd------------qWRIVGLRRGTSLGIFLD 441
gi 146102572 488 GLNATMDVITSPTWKVQGVIGPCVGTgk----msAs--VaeyeiglGGTc------------qWTTCQLDSTTTFAIYYD 549
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
2NUP_A       467 vvnqH-------------NAP--IPQGGRGAIQFVTQYQHS-SGQRRIRVTTIARNWA 508
gi 121958603 429 ----Ivnp--------dtN-P--LDSNRQGIIQLVSKYMDT-LGRRYIRVTTICRLFT 470
gi 75275798  568 ----S-------------KGD--IKN-DFVYFQFAVHYSNM-YQTEITRVITMRLQTV 604
gi 74832374  647 ----Tatl--------nkV-DgmPQQQQNRFIQFVTHFTTP-LGESRIRVTSVALPIA 690
gi 122022439 657 ----TatlgkksssgttgSKDphSNEAKRRFIQFVVRFNTP-HGESRVRVTSVVLPIA 709
gi 75036127  482 ----Tata--------snQQSgaASAYEKRFIQFVTRYTTP-RGEQRVRVTSVVQPVA 526
gi 122016926 446 ----Ttaa--------hpS-E--AAKRSVRYAQFITKYEI--GNEVRTRVCTVTHQAQ 486
gi 122112116 446 ----Tm-----------tVPE--AQKQPFRYVQFVTKYEI--GRETRVRVCTRKHVVQ 484
gi 123492738 442 ----Sk----------------gGVNGEKCFIQLLCRYRYFvTGKTHLRVTTAAVSFD 479
gi 146102572 550 ----Tast--------qsN-E--AAKNPLRYTQIVTRYEM--GQETHTRVTTLTLRQA 590
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