5JPQ


Conserved Protein Domain Family
BP28CT

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pfam08146: BP28CT 
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BP28CT (NUC211) domain
This C terminal domain is found in BAP28-like nucleolar proteins.
Statistics
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PSSM-Id: 336929
View PSSM: pfam08146
Aligned: 148 rows
Threshold Bit Score: 98.7632
Threshold Setting Gi: 118374577
Created: 26-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5JPQ_G        1517 KNVSSLSS--IFLSAMDLRrtvaagdiaSQIsamelD--------------------------------EIETKTHEDAL 1562
gi 156366129  1950 SHHDQLFK--VFLVLLDFRvtqhq-cgqglV-----E--------------------------------KIEGGVIDSLL 1989
gi 196010437  1774 SMQPKLIN--IFMEAFDYRittqakicsVSL-----D--------------------------------VSENAIIEAFL 1814
gi 1005968834 1710 lNLPNIQK--FALKLLDHRsihdgkleaEAI-----V--------------------------------KIEDTSIAAIS 1750
gi 675851172   573 TYLKMITEvvFLFSSLrvdas---vlkmNEL-----M--------------------------------EIENIYTDSIL 612
gi 1043421267 1871 SHQSELTA--FFLKALNYR---------AEH-----Tekdl------------------------eqvgTNEGHIINCLL 1910
gi 47213370   1981 FHQSELTS--FFLVALDFR---------AKH-----SgvsltvleqsvapnvtsqpqlccfqedlettaEIEGYVIDCLV 2044
gi 551510526  1857 AHQSELTT--FFLTSLDFR---------AEH-----Cqgdl------------------------ekawQVEGGVIDCLI 1896
gi 1110956283 1861 FHQSELTT--FFLTALDFR---------SEH-----Cqgdl------------------------ektaQVEGCVIDCLI 1900
gi 688579164  1866 NHQSELTS--FFLSALDFR---------AQH-----Cqgdl------------------------kktaEIEGCVIDCLL 1905
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5JPQ_G        1563 KMVYKLNDAAFRPIFSKFVEWAT-TGLpksdvtgRTYRLYVVFGFLDAFFGSLKSIVTGYAS-YIVDASVKALKAV---- 1636
gi 156366129  1990 SLVMKMSEATFRPVFLKLVEWAT-Rgn------aHKRRLLVFYRLCVSIAEKLKGLMTLFAG-YILKNCASLLDAN---- 2057
gi 196010437  1815 ALVVRLSEKTFWPAFRKVFDWAT-VGDv------PKERNIVFFRATNRIADTLKGLFLIFAS-DLVTYSAKLLDAN---- 1882
gi 1005968834 1751 TFVLKLSEASFRAFFYKVYDWLK-VTRed------fnRVITFYRLTNKLSDKLKELFSAFAApYIVIDCVKQLKAFhids 1823
gi 675851172   613 SFVVHLSEVTFRPILLKFFnsl----------ddNVDRLVTFYHLIFKLSRKLKAIFNIFVS-ILIKQMADILVQH---- 677
gi 1043421267 1911 IMVMKLSEVTFRPLFFKLFDWAKtDDA-------SKDRLLTFCRLADCIADKLKGLFTLFAG-HLVKPFADILNQTn--- 1979
gi 47213370   2045 AMVMKLSEVTFRSLFFKLCDWR--KSD-------SNERLLTFCRLTDHIAGRLKGLFVLFAG-NLVKPFADLLRQTn--- 2111
gi 551510526  1897 AMVMKLSEVTFRPLFFKLFDWT--KSD-------SKDRLLTFYRLCNRIAERLKGLFVLFAG-NLVKPLADVLRQTn--- 1963
gi 1110956283 1901 AMVMKLSEVTFRPLFFKLFDWS--KSE-------RKDRLLTFYRLSDHIADRLKGLFVLFAG-NLVKPFADLLRQTn--- 1967
gi 688579164  1906 VMIMKLSEVTFRPLFFKLFDWSKiDGA-------SKDRLLTFYRLADRIADKLKGLFVLFAG-QLVKPFSDLLHQLn--- 1974
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5JPQ_G        1637 ------------D---------------F--------------A--------------------VPEERNLWKRVLCTLA 1655
gi 156366129  2058 ------------NssktdqlffeeegveD--------------Q--------------------RGSSVQLVKFILDCLQ 2091
gi 196010437  1883 ------------Na-------------sKggkffsnnesdasiA--------------------EEKSSLLTELILDCLY 1917
gi 1005968834 1824 edsvfksknsknQk-------------aF--------------L--------------------EEIGHLIIINILTTLS 1856
gi 675851172   678 ------------Dt-------------kLtgd--------dnvT--------------------ECKTKLLVNFVLDTIS 704
gi 1043421267 1980 -----------tIk-------------tD--------------Kpffd------------sknnTEKSCLLLDYVIHCLH 2009
gi 47213370   2112 -----------sSs-------------tA--------------Evlfe------------sshaDQKVALLLQYVLDCLH 2141
gi 551510526  1964 -----------sAk-------------tD--------------Elifd------------sdrsEEKNCLLLRSVLDVLQ 1993
gi 1110956283 1968 -----------sSs-------------tE--------------Sllfds-----------dddgEEKSCLLLQYVLDCLH 1998
gi 688579164  1975 -----------tSh-------------tD--------------KaffdsedesdddsdeeaddnVTKSSLLLQYVLDCLH 2016
                          250
                   ....*....|
5JPQ_G        1656 KCFEHDQDGF 1665
gi 156366129  2092 KCLLYSTKGF 2101
gi 196010437  1918 KCFLYDRQKF 1927
gi 1005968834 1857 KSFQHDNnst 1866
gi 675851172   705 ECYLHDVDss 714
gi 1043421267 2010 KIFLYDNQHF 2019
gi 47213370   2142 KIFLYDTQRF 2151
gi 551510526  1994 KISLYDTQKF 2003
gi 1110956283 1999 KIFLYDSQRF 2008
gi 688579164  2017 KIFLYDTQHF 2026
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