4C3H


Conserved Protein Domain Family
RNA_polI_A14

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pfam08203: RNA_polI_A14 
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Yeast RNA polymerase I subunit RPA14
This is a family of yeast proteins. A14 is one of the final two subunits of Saccharomyces cerevisiae RNA polymerase I and is proposed to play a role in the recruitment of pol I to the promoter.
Statistics
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PSSM-Id: 311908
View PSSM: pfam08203
Aligned: 22 rows
Threshold Bit Score: 76.5766
Threshold Setting Gi: 254571181
Created: 21-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4C3H_D        19 PVVIHATQLpQHVSTDEVLQFLESFI-DEKENiidsttMNTISGNAADadaaavanTSLNIDTNLSSSISQLKRIQRDFK 97
gi 74585926   17 PTTVRVHRV-NDTTSSEAERILTSFI-DASEIn-----ISGKGTAETNt-------TGISGGNESPAIVSQLKRIQRSLR 82
gi 74603571   17 PTAVRVEAS-LAIDKSEAETILSDFI-SVSEAi-----AGSLPSSLDSskit-fsnTGLSSSTGSSAILSQLKRVQRDLR 88
gi 190346082  18 PTAIKFLSS-TSVTLEETEREVTHFI-DQTEKw-----KNALPGAQLNged---lgVGFSPSGDNSTVLSQLGRIQRDLR 87
gi 149237577  18 PTTVRVRSS-SLIPQSQAESLLTEFI-DASEFn-----NNPVNQEPQSq------kSGMASNSGNAAVLSQLRRIQRNLR 84
gi 459367210  17 PISIRAHNV-KNVTGSDVERILTEFI-DASELn-----ISGKVTDETKt-------TGLAGNSESPAVLSQLKRIQRSLR 82
gi 354544703  18 PTAVNVNAV-SSVTQEQAEQFLTQFI-DASEHn-----RNPLNLNDQDq------kTGFSSNSETVAVASQLKRIQRNLR 84
gi 150866543  18 PILTKIQTS-SSINNSEAEQILSEFI-YASEAv-----AASFTSSSLVdnea-gsaTGFSDSAGSNALLSQLKRVQRDLR 89
gi 575516217  17 PTSVVIKSS-KLATQSETERILTAFI-DISESv-----ATTVPGQASSsneilnadSGLSNSTGNAAIISQLKRLQRDLR 89
gi 254571181  15 PVSINVTGQ-QPLETENVQELLDEFIaKADEEt-----AQELNFMALNd------gTTATATNNNAAKISQLKRLQRELR 82

                 ....*
4C3H_D        98 GLPPA 102
gi 74585926   83 GLPPL 87
gi 74603571   89 GLPPL 93
gi 190346082  88 GLPPV 92
gi 149237577  85 GLPPL 89
gi 459367210  83 GLPPi 87
gi 354544703  85 GLPPL 89
gi 150866543  90 GLPPL 94
gi 575516217  90 GLPPT 94
gi 254571181  83 GLPPL 87
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