1GAX


Conserved Protein Domain Family
Anticodon_1

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pfam08264: Anticodon_1 
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Anticodon-binding domain of tRNA
This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA.
Statistics
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PSSM-Id: 311941
View PSSM: pfam08264
Aligned: 163 rows
Threshold Bit Score: 51.2576
Threshold Setting Gi: 189083148
Created: 26-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1GAX_A        607 DRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL---KAGNAhtlrtleevlAVLLKLLHPMM 683
gi 121729315  708 NKWIISQINRKISTATDALEKFQTRKALQSSL-FLFRKDVDYYLNRITIIGeeeKetli-------ylvNTWIRLLSPFI 779
gi 189030282  773 DAWYLSSFVKDVENVTNMMEDLKIREVTNVLYFILLNRT-KEYLNALEAMGrglDEVAKwvlr---ytvERWVKMMTPFT 848
gi 189082974  694 EKWLLSIIHYKVKEVSDLMNSLDLRKAFNIILYEYYEIL-RDYLSMVSNPNtsvl----------rkaiEIWARLISPGA 762
gi 48428671   699 DVWLLSIFRRYIEDVDKAYENLDLRTVYMTVYYTIYETI-KDYIELTNAKInkdii---------kkviSIWLRLMAPIT 768
gi 166231634  712 DKWLISEVAHVLERAREAYEKVRLRQAAVELLYN-AEAVFSQYLSMVDKPSksav-----------eaaKAWVVALEPIV 779
gi 32171571   696 DRWFLHEFREVVEETTEALEGFQIRRAYNRAFYGVMKLL-REYEAMKGHVkilg------------eiaEDWLKLLHPVI 762
gi 14423940   683 EAWFVARFSVRLRQFMESMDRYQIRDAYINIFYGVLNDL--RYLSSRGGDVnral----------tpviADWLRALMPVI 750
gi 123978792  679 DRWLLSKLQESIEYVTKAMEELRVRSATIHVLYEMENMA-SKYLELRGGKPgpal----------leyvKTWTKMLAPVA 747
gi 118194961  319 DRWIKSRLHGLAADAAATIEKMRLREALHSVLFGFEQDI-QWYLKRAAAKGrtdTGgmly------eacKARVAMLSPFA 391
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1GAX_A        684 PFLTSELYqaltgkeeLALEA-WPepg-----grDEEA--------ERAFEALKQAVTAVRA-LKAEAGLPPAQE----- 743
gi 121729315  780 PYATEEIWdtyndddvFISTLdWPvace---------------dliDEKIEKSEEIVQDLAKdIKEIIKITKSNP----- 839
gi 189030282  849 PFFAEEMWhelgfntfVVTEP-WPvkdee-lvnpLAEA----------AKEY---VEKVIED-IKEIIKVAKIEKp---- 908
gi 189082974  763 PHIAEEIWhifn-egfVSLTR-YPvpeel-evdgQAVI----------QLEY---IRHLINQ-VKEISSMANKQP----- 820
gi 48428671   769 PHLAEELWhkms-ntfVVKEK-FPsinev-eyneKSLL----------KVEY---LRSIIED-VN------RLSSelgke 825
gi 166231634  780 PHFAEELWqilggegfAATAP-WPklspdpaallAKRY-----------------VDMLIED-VKNIPAYKAGAK----- 835
gi 32171571   763 PFATDRLWrevlgedsFLLEEeWPdpsey-peepELSV----------AKEV---LDRLIED-VRDVEKVIGAEPgy--- 824
gi 14423940   751 PHHAEEYWhsyvsdtyVSVDP-FDenfqd-ryerTVRRfgmtcdqmYSAMDY---VEKVLQD-VKNIMQVTGIEP----- 819
gi 123978792  748 PHLAEEVWhrlggesfVSIEK-WPssdkt-kidyEAEL----------AIEY---LDKVIED-VKSILRIFKGKP----- 806
gi 118194961  392 PHISDEMWsrmkldgmASRSG-WPefpg--wedpESEH----------AEGF---IRGMMDD-IASIIKVTKISP----- 449

                  ....*.
1GAX_A        744 -VRVYL 748
gi 121729315  840 -EVVHL 844
gi 189030282  909 -KKVRI 913
gi 189082974  821 -EKLII 825
gi 48428671   826 aEKVVI 831
gi 166231634  836 -RVAIY 840
gi 32171571   825 tLHVYL 830
gi 14423940   820 -KSVEI 824
gi 123978792  807 -RRLII 811
gi 118194961  450 -SRIIL 454
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