Conserved Protein Domain Family
Toprim_N

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pfam08275: Toprim_N 
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DNA primase catalytic core, N-terminal domain
Statistics
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PSSM-Id: 311949
View PSSM: pfam08275
Aligned: 77 rows
Threshold Bit Score: 121.091
Threshold Setting Gi: 81614301
Created: 19-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2AU3_A       115 FYRESLLKNr--eASEYVKSRGIDPKVARKFDLGYAPSS-EALVKVLKENDLLEAYLETKNLLSPTK--GVYRDLFLRRV 189
gi 251757308 128 YHHLLINTKegqeALDYLLSRGFTKELINEFQIGYALDSwDFITKFLVKRGFSEAQMEKAGLLIRREdgSGYFDRFRNRV 207
gi 123003457 126 YYYALTKTVegeqALTYLQERGFTDALIKERGIGFAPDSsHFCHDFLQKKGYDIELAYEAGLLSRNEenFSYYDRFRNRI 205
gi 17433299  130 YHYILMETEegtaALTYLKERGMSEQMMTTFQIGFAPNHhATITSFLEKRGMDLQLAGAAGLLSERDd-GQMVDRFRNRI 208
gi 18203179  125 FHHVLMLTEegkaGRTYLERRGFTKEQIEHFQIGFAPPHwDALTNVLAKRDVDLKKAGESGLLVEREsdGKRYDRFRNRV 204
gi 81366367  127 YHSILTLTEegapGRVYAQERLFTQDQIEHFRIGYALNDwETLAVIFETNGLDLAVMAESGLLAKRKqgTGYYDLFRERL 206
gi 30179818  130 YHHILVNTKigepALNYLLERGLTQELIETFQIGFAPQKrDFLSQVFKNEQLDETLFEPSGLFVQRDn-GTFLDRFYQRI 208
gi 81746144  126 YHHLLKYTKdgkeGYQYLKDRGISDEALEDFQIGYAPNIkDFTLEFLTKKGFSKQLLVKNGILSAQNd-HDVIDRFRGRV 204
gi 123077259 122 yQQVLMTTKigerGLEYARKRGLDDDLLKHFKIGYAPGKsDLLLTYLRGEGYTDNQLAESGLFVKSQd-GRLFDRFRDRL 200
gi 19862493  123 YNILLMSTElgerARKYLEERGITDDVIKRFNIGLAPEEnDFIFKNLSN-KFDEEIMAKSGLFHFSN--NNVFDAFTNRI 199
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
2AU3_A       190 VIPIKDPRGRVIGFGGRRI-----VEDK--SpKYINSPDSRVFKKGENLFGLYEAK 238
gi 251757308 208 MFPIHDHHGAVVAFSGRALg-----SQQ--P-KYMNSPETPLFHKSKLLYNFYKAR 255
gi 123003457 206 MFPLKNAQGRIVGYSGRTY-----TGQE--P-KYLNSPETPIFQKRKLLYNLDKAR 253
gi 17433299  209 MFPITNDRGQIIAFSGRLFd----RDDG--P-KYLNSPETPVFNKRRILFHFSEAR 257
gi 18203179  205 IFPIRNGKGKIVAFGGRTL-----GDDK--P-KYLNSPESPIFQKGKLLYGFYQAR 252
gi 81366367  207 MFPITDSQGSVVAFGGRAI-----GEGQ--P-KYLNSPETPIFHKAKTLFHMHEAR 254
gi 30179818  209 MFPINDPQGNVIAFSGRLLktadfPGDE--MpKYLNSPETTLFNKRETLFNFDRAR 262
gi 81746144  205 IFPIRNAIGKTVGFVGRAL-----HDGV--EpKYLNSPEGGLFQKSKILFNFDLAK 253
gi 123077259 201 MFPMSDESGHLVAFSGRRIs----DDPE--EpKYLNSPETSIFNKSDLLFHFSEAK 250
gi 19862493  200 MFPITNEYGHTIGFSGRKW-----QENDdsKaKYINTSATTIFDKSYELWNLDKAK 250
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