Conserved Protein Domain Family
DnaG_DnaB_bind

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pfam08278: DnaG_DnaB_bind 
DNA primase DnaG DnaB-binding
Eubacterial DnaG primases interact with several factors to from the replisome. One of these factors in DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB.
Statistics
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PSSM-Id: 336983
View PSSM: pfam08278
Aligned: 180 rows
Threshold Bit Score: 44.8953
Threshold Setting Gi: 502888317
Created: 26-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81680735   442 WRNVVTLLLHRPRLA-----KLISPEIRARlieNPR--AGPLIARILEYT---------DLrdtpTAGMLFEHLRE-TP- 503
gi 122285624  454 MRLLISLIIQYPKLV-----KKIKNIKKIKk-lHIQ--GKKILIKLIELIkk-----kkIF----KTGYLLEFFRF-SK- 514
gi 81376928   446 LRIAIALLLQNPEIYsiaiqQINPALLHEQ--------EHHILLKLLQQLkd-----kpNA----NTATLIEFWRN-SS- 506
gi 1046209889 462 MRILIGLLLQYPNLA-----QLVSDINAIGq-vKMA--GIDIFIELLELCqr-----ypNI----TTAQILTECLE-RP- 522
gi 488373888  451 MRILIGLLVQNPDLA-----PLVPPLTGLTq-sKMP--GLALFSELVAACla-----qpGL----TTGQLLEQYRG-TD- 511
gi 640470662  451 MRILIGLLVQNPHLA-----TLVPSLAGLQq-aKLP--GLTLFTELVELCla-----qpGL----TTGQILEEYRE-TK- 511
gi 896183735  424 MRILIALLIQNPEFC-----QLVPPLEGLNt-eKIA--GLSLFIELVSLCqa-----qpGL----NTGQIIELYRE-NK- 484
gi 506353487  451 MRVLIALLIQNPRLA-----KMVPSLEDIQq-aRIA--GLPLFIELLEHCla-----cpGL----NTAHLLELYRG-KE- 511
gi 502852625  456 iSILIKLLIKNPNFV-----RYFPNFNISKy-eNIKlfGIKLFLKIFNICrnypeidsnQLekrfNNDVLFRKLKEdSEn 529
gi 503643690  448 IRLLISLLLQNPELA-----KEIKNIKKINk-fHVV--GINIFVDLLKILhk-----npNL----ATNQLIEYYRN-SK- 508
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81680735   504 ----EGELARNLLKPGLLTPEE--GMEREFVDALDRVRALLRDERLSQLIEKsk-aAQLTDSEREELR 564
gi 122285624  515 ----LGKIFKYLSTWNHIILKK--KIFFTFKEFLNNFKQQHLEYKYNKLITIer-kKGFDVNEKKKIW 575
gi 81376928   507 ----YFELIVKLAAWDHQVPEQ--ELTKEFIDVLLFLQKQNREILIRQYIEKsr-kTGLTEAERLSLQ 567
gi 1046209889 523 ----FYKQLSRLATWEFHYQDD--DIESIFTHTLKELYDNILAQRQDELIAKer-vSGLNTAEKKELA 583
gi 488373888  512 ----YAATLEKLAVWDDIADKD--IAEKTFTDALDHLFDSALELRLTELIARsr-tQGLSAAEREEVR 572
gi 640470662  512 ----FSASLETLSAWNDISDNE--IAEETFLDSLNHMFDSVLEQRLEELLALsr-tQGLTSSEREEVR 572
gi 896183735  485 ----FGKQLEKLAMWNDIDIDE--IAEKTFTDTLDHLFLTAMDERLNALIAKer-tEGLTQNEREEVQ 545
gi 506353487  512 ----CQKQLEQLSAWGDMEFKEekMIQIIFTDALNHLFDSILQQRLEILIARarapLGLNTSERQEVR 575
gi 502852625  530 hnffLEKKIER----------------RIFQDAMFHLTSIAVNERFNFLISKer-kIGLNIKEKEEVL 580
gi 503643690  509 ----LEKIFKYLIVWNHMIGKN--KIYPTFLELLKKIKIQNLEYKYTYFLTKer-kEGLNITEKKKLW 569
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