Conserved Protein Domain Family
Glyco_hydro_98M

?
pfam08306: Glyco_hydro_98M 
Click on image for an interactive view with Cn3D
Glycosyl hydrolase family 98
This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.
Statistics
?
PSSM-Id: 311970
View PSSM: pfam08306
Aligned: 7 rows
Threshold Bit Score: 362.318
Threshold Setting Gi: 81768108
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WMH_A         23 ADNRVQMRTTINNESPLLLSPLygnd----------ngnGL----WWGntlkgaweaIPEDVKPYAAIELHPakvckptS 88
gi 81587394    31 ADNRVQMRTTINNESPLLLSPLygndng-----nglwwgNTlkgaWEA---------IPEDVKPYVAIELHPakvckptS 96
gi 490739942   61 AAGGSSLRRPCSPEKPMLIVHI-----------------DT----WNYadpakiirlIPEDIRPYCVFNVSMsinydmnT 119
gi 497761920   57 AATTSNLRRPVSSEQPMLIVHI-----------------DT----WNYadpakiidlIPEDILPYVVFNISLsinwdstN 115
gi 120591396   49 ATPGVALRRPVSPQQPMFLVHV-----------------DT----WNSadpqkiidlIPQDVRPYTVLVLSLsilhddkT 107
gi 505371886   51 eAANSVMRRPCSPDQPMLIVHI-----------------DT----WNYadpakiialIPEDIKPYVVFNISLsinwsstD 109
gi 81768108   209 DWTPAEKRREISNEKPLLMIPLyangskyekgdyafwgdDTlvgkWKE---------VPDDLKPYTVIQLHP-------D 272
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WMH_A         89 Cip--rDTKELREWYvkmlEEAQSln---------ipVFLVIMSAGernTVP--------------------------PE 131
gi 81587394    97 Cip--rDTKELREWYvkmlEEAQSln---------ipVFLVIMSAGernTVP--------------------------PE 139
gi 490739942  120 H-----QWKMVKDGY----RLAKSwlrtc---adegvWTMVQPASGgqcHFPdypad-----------------ydfeNT 170
gi 497761920  116 N-----KWLMVQDGY----QTAKSwlktc---sdkgvWTMIQPSSGgqcHFPdysan-----------------ydfeNT 166
gi 120591396  108 StpaqcRWRQVENGI----ETARSwikva---adnrmWAMVQPSSGgftHFPdydgn-----------------adleTT 163
gi 505371886  110 H-----KWLMVQDGY----ECAKSwlktc---adegvWCMVQPASGgqcHLPdydssgnivnypnksqfvphadddyeNT 177
gi 81768108   273 Dlp--kRDGVAADFYehmlNEAQSyvnpktnknepipIVLTVYTAG---NVPgytaa-----------------hwltTE 330
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WMH_A        132 WLDEQFQKYSVLKGVLNIENYWIYNNQLAP--------HSAKYLEVCAKYGAHF-------IWHDH---------EKwfw 187
gi 81587394   140 WLDEQFQKYSVLKGVLNIENYWIYNNQLAP--------HSAKYLEVCAKYGAHF-------IWHDHekwfwetimND--- 201
gi 490739942  171 LFGEFFRDYPTFIGFNYSEQFWGFQSRDFPvtpmqryqHFAGLLKLCHKYGGYLdinfcanYWSAG---------LN--- 238
gi 497761920  167 LFAEFFRDYPSFIGYNYSEQFWGFQSEDFPvtplqryqHFAGLLKLCNKYGGYLniswcanQWSSP---------LN--- 234
gi 120591396  164 VYGEFFRDYPNFLGFNYAEQFWGFDQTCSPsadk-rweHWANLLKLTNKYGGYLdvsftggFWGAA---------LN--- 230
gi 505371886  178 IYAEFFRDYPNFIGFNYSEQFWGFESQDFPvtpiqryqHFAKLLKLCNKYGGYLninwcanYWSAA---------LN--- 245
gi 81768108   331 WIEDMYSKYSALQGVFSTENYWVWTDNVES--------NAAEYLKLSAKYGGYF-------IWSEQ---------NN--- 383
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WMH_A        188 ETimn-------dptFFEASQKYHKNLVLATKNTPIRddAG--TDSIVSGFWLSGLCDNWGSSTDTWKWWEKhy---tnT 255
gi 81587394   202 PT-------------FFEASQKYHKNLVLATKNTPIR--DDagTDSIVSGFWLSGLCDNWGSSTDTWKWWEKhytntfeT 266
gi 490739942  239 PIammk-----ncpeWKQACERYPENYILEEKYTQRGyiAD--TESQTLGCYLAGYCGNYGVRYDKTGWSDG-------D 304
gi 497761920  235 PIamlk-----kcteWREACSLYSENYILEEKYTQGSfiED--VESEVLGAYLSGNCGNFGVRYDETGWTDR-------S 300
gi 120591396  231 PLamak-----rspvLEGALRAYAKNFIIEEKFTANYgfHD--NESVSLGMYLSGYAGNYGIRPDRSGWYNA-------- 295
gi 505371886  246 PVamlk-----rcpeWRSACEQYSANLQLEEKYTQLGfsED--VESEVLGAYLSGYCGNYGVRYDETGWSDS-------T 311
gi 81768108   384 GGsiekafgsngktvFKEAVEKYWENFIFMYKNTPQAegNDapTSSYMTGLWLTDYAYQWGGLMDTWKWYETgkwklfeS 463
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2WMH_A        256 fetGRARDMRSYASEPESMIAMEMMNVytGGGTVYNFECAAYTFMTNDVP---------------TPAFTKGIIPFFRHA 320
gi 81587394   267 ---GRARDMRSYASEPESMIAMEMMNVytGGGTVYNFECAAYTFMTNDVP---------------TPAFTKGIIPFFRHA 328
gi 490739942  305 angGGLESQDQYRQVTELPICMERFAF--NGATVIDGPELVWADDFKETWgyndaegyhardwamYDQFRNVTLDFFRKM 382
gi 497761920  301 addKPLSSKNQYRVSTGLPIVLERMAF--NGATIIDGPELIWADDFKEVGgvkdsegynvrswamHDQYQNDFLDVFRKV 378
gi 120591396  296 ------DGSSTYPVPAGAPHLIEHLAL--TGQTVFDGPELIMLDMVRNQPngqtsdgystrrwdfHPQFRNIHLDIYRKI 367
gi 505371886  312 wsgSGDVTKEQYRQITGLPIHMERMAL--NGATIIDGPELVWADDFAEKWggikdgdyscrswdtKDQYVNDTLGFFRKL 389
gi 81768108   464 gniGKTQGNRQWLTEPEALLGIEAMNIylNGGCVYNFEHPAYTYGVRNEE---------------SPLFSNVIKEFFRYV 528

                  ....*
2WMH_A        321 IQNPA 325
gi 81587394   329 IQNPA 333
gi 490739942  383 IDGTV 387
gi 497761920  379 ISGTI 383
gi 120591396  368 LDGTL 372
gi 505371886  390 VDGTI 394
gi 81768108   529 INNPS 533
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap