Conserved Protein Domain Family
RAP

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pfam08373: RAP 
RAP domain
This domain is found in various eukaryotic species, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain. The domain is involved in plant defense in response to bacterial infection.
Statistics
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PSSM-Id: 312021
View PSSM: pfam08373
Aligned: 70 rows
Threshold Bit Score: 41.8039
Threshold Setting Gi: 74969308
Created: 23-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124473044  489 IEVNGPHHYcsivgdtlpndavqHLSTnQAMYe----tLKTSLKTRLLQQKGYRVINIPYFKWNGWc-iSNKQDKI---L 560
gi 74882860   851 ICVYGKEH---------------LMRTlANSHwdymntGFTSLQMRILASHGWKIIPINGGEWLKL----NTEQKKt-yL 910
gi 74862433  1014 VSIFGKEY---------------LMRTlKKSSwdfmntGIVTLQMRILHAHGWKIIPINAGEWLQL----NFDQKKn-lL 1073
gi 121981211  696 LEIDGCTHF--------------LSKN-IK-R------QSTNSKIDTLQKLGYKVIQLDTYELRQLsqsQDRVKTVe-yL 752
gi 74953890   501 IEVDGPYHYsttinp---rinkiLKREvDNYRlg--ytLNSKLKSRILTKSGFKFINIPFYQWPQT-----TNEQVy-fI 569
gi 74953249   452 IEIDGPYHYnilldeqncdgegiIRYGnINLRl----nGKTIYRNNILSKLGYKLVSIPWFVIHQY-----NNDNVynyV 522
gi 154153971 1047 VEVDGVHHF--------------VEDG-RNYS------ESHIERMEMLRRAGWKIINTPYYKWYNHg-wLDENSEI---L 1101
gi 156085826  570 IEIDGPYHFnttlns---slnsiLNRHvDDYRlt--ytYNSRIKMYMLRQGGYKVIHIPYFMWPSG-----KQEQMv-yA 638
gi 829140814  419 VEVNGRFHY--------------VHNR---YS------GVYQIKHTCLEKQGYIIIEIKDYDWYAL----KENEKEl-yI 470
gi 901871046  836 ICVFGKEH---------------LMRTlETASwdhmnsGFVSLQMRVLHAHGWKIIPINGGQWLQM----NSEQKEa-lL 895

                  ...
gi 124473044  561 NDM 563
gi 74882860   911 QEY 913
gi 74862433  1074 SEY 1076
gi 121981211  753 isk 755
gi 74953890   570 SNL 572
gi 74953249   523 KDV 525
gi 154153971 1102 KRE 1104
gi 156085826  639 KRC 641
gi 829140814  471 AKl 473
gi 901871046  896 REN 898
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