5AMR


Conserved Protein Domain Family
L_protein_N

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pfam15518: L_protein_N 
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L protein N-terminus
This endonuclease domain is found at the N-terminus of many bunyavirus L proteins.
Statistics
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PSSM-Id: 317864
View PSSM: pfam15518
Aligned: 21 rows
Threshold Bit Score: 102.012
Threshold Setting Gi: 339283814
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5AMR_A          7 YQQFLARINTARDACVAKDIDVDLLMARHDYFGRELCKSLNIEYRNDVPFIDIILDirpevdpltidaPHITPDNYL-Y- 84
gi 81923592   526 GNRKYHDFPSIPDNRAYSCKISTVKNIVHDFTFALFGDDLDVSFTDAGLFIPGDPD------------NNKTPDMIIkH- 592
gi 985484882   52 DIQGASEIGSTLLPSMSIDVE-DMANFVHDFTFGHLADKTDRLLMREFP---IMNDg----------fDHLSPDMIIkT- 116
gi 330850811   52 GRGEWSTIGSTVKDQIKLNP-QNLPNFVHDFTFGHLANSTDSPFVSFFPA---VGDg----------fDHLTPDVMI-Rm 116
gi 327178186   53 NGVDYSTVGSSLSS-VIEVPDKSLPNLIHDIVFSHLADSTDTQFSTQFGV---RSDs----------yDHLSPDVIIkT- 117
gi 327178178   53 NGVDYSTIGSSLSSTI-EVPDKNLPNLIHDIVFSHLSDKTDTTFSSMFGV---KQDt----------yDHLSPDVIIkT- 117
gi 961438669   51 sELADGQSGSTIQP-FESVPAQNLTLFKHDFTFGHLADTTDKKFVEVFGVLENRADd----------sDFQSPDMIIeT- 118
gi 327177387   52 VPDSASQLGSSINAGLITIQLSEAYKINHDFTFSGLSKTTDRRLSEVFP---ITHDg----------sDGMTPDVIH-Tr 117
gi 374349356    6 YNQYQARINAARDPTVAKDIDVDLMIDRHNYFGRQLCEAINIQYRNDVPLLDILLDaipgldpmaleiPNITPDNYI-I- 83
gi 374349406    6 YDQYLARINAVRDPSIAKDIDVDLMIDRHNYFGRHLCDVLNIQYRNDVPLIDILLEtvpgfdptavdvPNITPDNYI-M- 83
                          90       100
                  ....*....|....*....|....*
5AMR_A         85 INNVLYIIDYKVSVSNESSVITYDK 109
gi 81923592   593 GEKHYSVIEFTTRNTNMRPDVRSRG 617
gi 985484882  117 TSGMYNIVEFTTFRGDERGAFQAAM 141
gi 330850811  117 PSGRTHIIEFTTFRGTSQGAQQAAl 141
gi 327178186  118 AAGSYFVVEFTTNRGGEKGALQACK 142
gi 327178178  118 AAGAYFVVEFTTNRGGERASFNSCK 142
gi 961438669  119 ETGHVYVVEFTTTMGDANSADLAAR 143
gi 327177387  118 LDGTIVVVEFTTTRSHNIGGLEAAY 142
gi 374349356   84 LDGRIIIIDYKVSVSSETTEITLEK 108
gi 374349406   84 INGRIVIIDYKVSVGSESTEITLEK 108
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