Conserved Protein Domain Family
DUF4824

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pfam16106: DUF4824 
Domain of unknown function (DUF4824)
This family consists of several hypothetical lipoproteins around 270 residues in length and is mainly found in Pseudomonas species. The function of this family is unknown.
Statistics
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PSSM-Id: 318353
View PSSM: pfam16106
Aligned: 10 rows
Threshold Bit Score: 262.74
Threshold Setting Gi: 123574337
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81541779   19 ANLAALGGVAWNRSGEAESKLVLSQRELQRN-WSygfW-SEENSGVELRLE-------LRspssep---------psdla 80
gi 123574337  16 VNVVVLVGVAHNRRGAPEAVLTLSERELPLA-WNf--R-SKENTGVSLRLNvnhdadhWE-------------------- 71
gi 501127042  21 INGIVLSGVAYNRSGDPNAVVVLSERELNLP-YW---T-PKENSGMALEIA-------WQtlgmergdsygwytyrsrnp 88
gi 505288951  19 vNAVALGGVAWNRSGEPDSRLPLTQRELDRN-SS---W-HNENSGLSLRLR-------WRtptrdegt-----rhnrgwl 81
gi 505938112  21 ANGMILFQVNANRKGEAEARLWLTEREMPQA-FWl----AHENSGMELRLV-------WRtlsrdvng------gedrmp 82
gi 506246928  20 TNAIALSSVARNRADEPESRVMLSERELALPaGGy--R-HAENSGLALALN-------WRvldadeerpdygyslhagrp 89
gi 500056770  16 TNGIILAGVLHNRLGEPDARVELTERELRLE-GH-----NRENSAVSLRLT-------LQrqhddi----------ngpf 72
gi 501465675  15 TNILLLGKVWYNRWEPHYGALTLSERELRLP-SGy--RfNKENSGISLDLT-------WNtkdddtpnr----lwgynre 80
gi 512736352  17 TNAIALGGVWYNRSGEADSRLLLSEREVRRS-YDw--A-DHENSGLALRLD-------WRrpsaatg-------ddpyqs 78
gi 500269755  15 SNAVALGGVWYNRSGALEAQLLLSERELQRV-YGgwlR-QQDDGVLRLQLS-------WRhageg------------wql 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81541779   81 pPLPPEQMRALGFSIPD-A-LDEESVRRyrRQQEKQVLLVLELDGPAYRREVRLAEERL-AEARARSKalpkdemlSSQM 157
gi 123574337  72 -WFDEDKLAELGFDTEPyM-EVEDKHIR--RALPKKAYVVLEYDGVAWQQYRQRQREKIeSLALQVAQ--------GKLK 139
gi 501127042  89 rWMDEAKLRELGFNVDR-----YKARHQykPDTPREVFVVLELGGTPWQQFLEQMDTAL-EKIRAAHQaapndedlEKEY 162
gi 505288951  82 pAIDAQKMARLGFAMPA-Q-VDDDSAPRfsRQQSRDALLVLELDGPLYQREVQLTRKRL-DEARQAADaapqnarlADER 158
gi 505938112  83 sWLSGKKLEELGFRFVDgL-SVDNQPTKv--LMSKKVYLVLEYNGPAYQTARRRVAQIL-EHEEAALRanpa-drnGSIR 157
gi 506246928  90 aWLDAGRLAALGFDTAAgD-ATPEARERftRQLPRQVLIVLELAGPAWQQAVERARANA-LRRTAAATanpdskafAEQA 167
gi 500056770  73 pWLERGKLEQLGFDCRT-PpDAQDAGLRydRALPRRVWLVLEYEGKAWQAWRSEAKRRLaELSRRGTEage----gsrPR 147
gi 501465675  81 lTLSDEHFSSFGFAACN----------NqyRERAQPGWILVEFNGPAYRNYLASMT----ARRDQHIAaeptdetlQKTW 146
gi 512736352  79 lMLDQDSLLQLGFSATD------RETLRfdN-RNREVLVVLELDGPARVAELERARQRL-AKARSELRsapqdksrQEAE 150
gi 500269755  74 pWLDEAKLRELGFAAGT-------DEQAwsRQPAREVWLVLELDGPVHRRQIEQARQAL-EAAEAELQarpesevlQQER 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81541779  158 EAARHQLKHEQ----GEASRLFIVDTGLDLAAL------RQRYPERQRYAIVKGRVRP------WSAVDGGRTLVGGYIS 221
gi 123574337 140 AEAAERQKKEKlfqlTVASRLFAIDAGLDPRAL------RERYSDRGRYIIVAAQVRMqvdwrpKTKDNRRRRHLSGRVQ 213
gi 501127042 163 TRFQERVNEVK----TSGSRLFAVDAGTDAKAL------RVEYSDRNRFIIAPAIVAMd-----TFYANDKKEKIVGHIQ 227
gi 505288951 159 DFIRRELDSEE----KTDTRLLLKDVGLDLKAL------RAQYPDRQRYLIVHGRVRP------VSNYYQHIWTLGGTAS 222
gi 505938112 158 LQAKKRIRAEE----QSESRLFVIDAGLDPQPL------RTSYPETNRFIVTPGVIEL------MYRTEGGRQWAAGAIR 221
gi 506246928 168 KAARDNLAIEE----GHASRLFAIDAGLDAAVL------RARYPDRQRTLILRGTVRP------SVRSSDRQHRLAGYIS 231
gi 500056770 148 NFEAKRLRWES----MAGSRLFAIDAGNDPASL------RQRYPDRTHCIITPALVRIqll-raHDQEPHRPARLAGYVQ 216
gi 501465675 147 QQEKDTLDKRVrqvaQEESRLFVIDAAANSAVLiknqvsLQAKNTQTQYLTLPAKIRSs----yRRCLDNNAKPTSIQID 222
gi 512736352 151 RAARNYVEQEE----HRSSRLFAVDVGLDREAL------RSRYPDRGRYAILSGIVSA------WV----RDGRLTGQIS 210
gi 500269755 146 DEHRRRLLHEQ----QQASRLILVDAGVDAEVL------RQRWPDRQRQVVLVGRMEP---------YRHGAEAGYGASI 206
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 81541779  222 RTDLAAINVPRQWHAVFAKVDEQNYRl-------------aPLELHLSFGQRLEPWI 265
gi 123574337 214 QILVEQLHVPRPLYSDLQDLAEGSRIrpgytyynpksparvRYQVQVAFGQRLEPWI 270
gi 501127042 228 RLSVGQIHVPVGNKQVFAALLSQKRTrsd---------tppAFGVEVAYGKRLEPWI 275
gi 505288951 223 AIGTDSINVPYQWRERLDRITTQPHRaadg--------raqPFIAEVAFGRRLEPWI 271
gi 505938112 222 SISPDTVHVPLEHRVTLEQLAGKGKFlste-------gkapRYEVELVYGSRRVPWI 271
gi 506246928 232 AIAIDRINVPFAWRGLLEPLRNTSRPaase--------rtpRYQAQVAVGQHLEPWI 280
gi 500056770 217 QLLTDSIQVPRDRRGVLTSLAASRQEysfsgqs--ekvfapRYRVTLNYGKRHEPWV 271
gi 501465675 223 SLLIARIHVPNRLARQLPNTSNNNSV---------------RYQATLRYGRLLEPWV 264
gi 512736352 211 RLRIAEINVPHAWREGLRDGLVRDREdkp----------saRLRLWLSIGQRLEPWI 257
gi 500269755 207 RLENDRLSVPHAYRELARGWERSYEQsg------------fKAQVEVAFGRRHEPWV 251
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