Conserved Protein Domain Family
DUF4856

?
pfam16148: DUF4856 
Domain of unknown function (DUF4856)
This family consists of uncharacterized proteins around 400 residues in length and is mainly found in various Bacteroides and Prevotella species. The function of this family is unknown.
Statistics
?
PSSM-Id: 318393
View PSSM: pfam16148
Aligned: 16 rows
Threshold Bit Score: 408.315
Threshold Setting Gi: 496520076
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81315448   40 PSYKFSRNGESSVNV----LECGFLKSPIdrifS-----EYMN-----EARMSTKRDYDEALRIYHEGNFGL-------- 97
gi 502952473  38 STYSFSRGGVSTVSFsgqtTRILMSEEIV----S-----SFSDfdnatEASIDAMFAHEEGANDFSSEDLNAsn------ 102
gi 504837965  36 TEYVFERDGESTVSFsgqtTRLQMAEEMI----P-----AFFDpssstIESLNGMYAHEEGANNFSNDALNSsg------ 100
gi 503930706  41 ATYTFNRNGVTTVDFngqkSRILMLQEIA----DyvktqGASGan-vsDVKLLNMYANAN--TPFTNGELNSsk------ 107
gi 504750084  46 YEYKFSRNGLSTVD-------LETGKEMI-----------------------DLFYLLDNGMKIASSQSRNYyerkgsvy 95
gi 524027209  45 PEYKFSRNGRSSVDY----YECALLDEPL----Q-----IIYStf-lrEARINNEGSRNTVYNYFRQGLYGLv------- 103
gi 754602480  36 lKYSFSRNGSSSVDV----LECELVKEPI----D-----RIYNsy-lkRAQISNQSNYDEVMGLFTNGMYHL-------- 93
gi 500641481  41 ATYTFERNSVTSVDYagqtSRLLMLDEMGnyikT-----AATTatavdDAFLSDMYENKN--NRFIGAGLNAsg------ 107
gi 503760122  38 VSYSFERDGESTVSFsgqtTRIKMAHELL----T-----NFLDes-ntAESLKAMFAHDDGAADFEDADLNAsd------ 101
gi 503518001  37 ATYSFERNGESTVSFsgqtTRIAMAQEIV----S-----EMSDfdnasIASLTDMFANEN--NPFEDADLNAsd------ 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81315448   98 --KPQKEVSASSKHLK---------DRDKILKDIDAWFEtsariaglGANIPSYEHRNREAVKGLTGYVGNg-iGDkDIC 165
gi 502952473 103 -kSVRSKVAASRDFFStn-----ttESAEIKADFDGFIA--------DQVNIVFPNQNTAAQPGVAGQIAD---GT-STR 164
gi 504837965 101 -kNIKSKVAASIDFFAsn-----tvESAKIQQDFEDFIA--------GQVNSVFPFWNTEASIGVAGQIAE---GT-TTR 162
gi 503930706 108 tkQLRDKTAASLDYFSsn-----svEQAEERV----FFE--------NKLREVGSAGAGTATEGVAGIF--------EKR 162
gi 504750084  96 alSMKDITAASS-YYAsk-----taLQTTVRNEIDTMF---------GELKTISDNSGLEAKKGQAGFVGY---EE-ERR 156
gi 524027209 104 --SPQSVVASSVLHQA---------DRAEVINDIEDCFKaieklsglGTEAPN-LTRNQRASIGVAGYVGThigDD-YIF 170
gi 754602480  94 --KPKEEIATSPLHLA---------KKSVIEQDIITLIDvssaiagkGEANP-FDHRNRPANYGRTGYIGQs-iGDvNLS 160
gi 500641481 108 -kQLKDKTAASKDYFSlyqgggsvvEQTEIRNLYVTQF-----------VNAKAASQGINASAGIAGIYTD---GT-SKR 171
gi 503760122 102 -kNLRSKTAASVDYFYan-----ttDQTLIRADFESWIE--------GQVNEVFANWNVSAAAGIAGQLAD---GE-KIR 163
gi 503518001 100 -kSVKSKVAASTDYFStn-----aaASAEIKAYIESHFT--------TQINEVFPAQNTQASIGVAGQIAD---GE-STR 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81315448  166 YVDERGIAVAEVYKYAIMGAIYLDKILNIHLSEQILENNEVLVRNDLTQLLPGHNYTELEHHWDLAYGYY---------- 235
gi 502952473 165 YVNESGIELNQYFAKGLIGALMTDQILNNYLSTAVLDEADNRDTNDNDITEEGSAYTTMEHKWDEAYGYLfgasatadnp 244
gi 504837965 163 YVSAKGLEYDQAFVKGLLGALMTDQMLNNYFSTAVLDAGQNVENNTNDITDEGKPYTTMEHKWDEAYGYIfgnapdaanp 242
gi 503930706 163 YYSANGLEPIQVVLKGLMGACFIDQICNNYLSTKKLDAGTNREDNTNKKLVVGTNYTEMEHAWDEAYGYVygagrd---- 238
gi 504750084 157 YVDAHGIETGQVLQKALMGVVLLDQILNEHLGEEVLGNAQLQKDNSNLVMVSGKRYTALEHHWDRAYAYMgrens----- 231
gi 524027209 171 FATQDGLVPAEYYRELVRGAIYLDLILNVHLASNLYAPGELLTRHEHTYLPDGHNYTELEHHWDLAFGYYt--------- 241
gi 754602480 161 FADEKGLVVAEIFNNSLIGAIYLDKILNYHLDEQFFDNAELIAKHENVELLVGRNYTELEHHWDLAYGYF---------- 230
gi 500641481 172 LFATNGLEPQQVLLKGMMGSCMMDQICNNYLSLNKLDEGTNRTNNTSKVLETGKSYTTMEHNWDEAYGYLygadntt--- 248
gi 503760122 164 YVNAKGLEYNQLFAKGLIGALMTDQALNNYLSPTVLDESSNRTDNDAGTVLEGKSYTNMEHKWDEAYGYVyglnadasd- 242
gi 503518001 162 YVAANGLEYNQIVAKSLIGALMVDQMLNNYLGTNVLDAGTNIADNDADVLVEGKVYTDMEHKWDEAFGYLfgnsadpana 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81315448  236 --------DFWKTLAQSDGlpalKDCHL------RISRSFVKGRALMTTSQYDEMRLQADTIRQELSRVVAVRAMHLLV- 300
gi 502952473 245 vatigdadSFLNKYVGRVE----GDADFagt-tqTIFDAFKLGRAAIVAKDYEVRDAQAEIIRTEISKVIGIRAVYYLQq 319
gi 504837965 243 latvgnddNYLNKYLGRQA----GDPDFeea-pqRVFNAFALGRAAIVAKDYELRDEQAEIVRKEISEMIGIRAVYYLQi 317
gi 503930706 239 --adgknaKFWDSYIDQVN----ADKDFntl-kgDINLAFRLGRAAIVNNDYVTRDLQIAIIKEKLAKVAAVRAVYYLMe 311
gi 504750084 232 ----kftpLFIANYLEKET----KDMPFlagideRVYTAFYKGRKAVVDKDYAEMKKQAAIIRGELNKLFAARAIYYLKk 303
gi 524027209 242 --------HFWQPLVSSINlpllGKSRI------QLYNAFALGRWALTNYRYDILLEQLQLIRIELSKVVAVRALQLLQ- 306
gi 754602480 231 --------AFLRPLVQAEGiallKDSERi------LFNAFVQGRIELGRYRYEDMKKHLKIIRSELSRAIAIQIVDILV- 295
gi 500641481 249 --ttpntfKFWSSYINQVS----ADSDFntl-kaDIDLAFRKGRAAIVANDYAVRDAQIDIIKAKIAMIPAVRAVYYLQe 321
gi 503760122 243 pnadlgadSFLNEYIGKLE----EDADFagi-adDIFQAFKLGRAAIVAGDYGVRDAQAEIIREKISLVPAVRGVFYMQr 317
gi 503518001 242 natigsddFFLNRYLGRVE----GDEDFagi-aqDVFDAFKLGRAAIVAKDYELRDEQAEILRTKISEVVGIRAVYYLQq 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81315448  301 GPNTLANLkeN--PRRAFRLLSQAYGLIYAAQFARNME-GKSFLTNEETGILLHELE--KG--DGLWDKerllgreqTEG 373
gi 502952473 320 GSVAITNN--D--MGAAFHDLSEGIGFVYSLQFTRQPGtNAQLFTRAEVQALIANLL--DDgeNGLWNI--------TPE 385
gi 504837965 318 AKVQFDNG--N--LGAALHDLSEGYGFIYSLRFTRNPDtNAPNFSSEEVDGYLTTMLesSD--NGLWDI--------SFA 383
gi 503930706 312 GKKNLV-G--G--AAKTFHALSEGYGFIKCLRYTNKQGtNSPYLSKNEVDVILNKLM--AGr-NGFWDVd------ySKN 377
gi 504750084 304 GIPDLRE---D--VRNAFHGLSEAYGFIYALNVARKED-GSSYLSPAEIQQILAEFK--GE--HGFWDVdrlaadesTKG 373
gi 524027209 307 GNITMANYreE--PENALFFLSQGVGALYSLQFACDKE-GQPLFSYSEVKAMQEQLL--AG--NGLWDRdqligsdgNTG 379
gi 754602480 296 GENTLVNM--DegTGYAFPFISRAYGLIYTMQFARNAE-GKPYFTYEEIQSYLQELK--ND--KGLWDKdkllsdvnHKG 368
gi 500641481 322 GKGKLTTA--N--GAGAFHALSEAYGFILSLRYTNKPGtNNPYFTKAEVDTMLASMI--SGt-NGLWDIn------tLGL 388
gi 503760122 318 AKATLADEvpN--YASAFHALSEAYGFIYSLRFTRKPGtDAPYFSKAESDELLEELM--DDgaNGLWDL--------KAE 385
gi 503518001 317 GKNAIEAG--N--FGTAFHDLSEGFGFVYSLQFTRNPDtDAPYLSREEVQGIVSQLT--AG--NGLWEV--------TPA 380
                        410
                 ....*....|....*
gi 81315448  374 ALYNLAVRIGEKFDV 388
gi 502952473 386 SLQEVSEAIASKFSF 400
gi 504837965 384 TLDELSNTIAARFDF 398
gi 503930706 378 NLELLAKEIADKFGF 392
gi 504750084 374 SLLNLSKQIADKFGF 388
gi 524027209 380 LLHTITKEVAHRFEL 394
gi 754602480 369 SLKNIASEIGKPFGI 383
gi 500641481 389 KLDAISTQIAAKFGF 403
gi 503760122 386 TIDEISEDIAERFGF 400
gi 503518001 381 TLDLISTTITDRFDF 395
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap