2LR4


Conserved Protein Domain Family
DUF4879

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pfam16219: DUF4879 
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Domain of unknown function (DUF4879)
family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.
Statistics
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PSSM-Id: 318459
View PSSM: pfam16219
Aligned: 7 rows
Threshold Bit Score: 127.584
Threshold Setting Gi: 388603847
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2LR4_A         3 EALPLYYLQITGITS--D---Gnd----faWDNLTSs-QTKAPNVLKGNKLYVKARFMGYtkltvitGkDGKNLLYNg-- 70
gi 81418029   69 PAPPLTNMWVYAVGS--Tn-cG--------WEYTSN--LPVTNCNHGGQQLRAAVLEVGY-------GyNSFAWMNGgal 128
gi 123652776  28 SAPPLSRVEILKVLS--Ps-cG--------LEDVSDg-RERTQCDHNGPNIKVYVLEIGY-------GrEPHVTLDG--- 85
gi 922068571  83 PAPGITYFQIVGICS--Sy-sGgcnpatytWESIDAy-QTSTVFNHGGSIVGTAVLEYGY-------G-NGGANLGGv-- 148
gi 503465857   3 QAMPLQEVRVIGVCSekSk-gE--------WEEIKKg-QSMTRHSHGGSFLRIATVDIGY-------GhSGVEKMNSs-- 63
gi 696580804  65 PAPALSSVQVYAVYS--SlkgG--------WQAVPT--NTLSLSGYAGGTLRIAVLEVGY-------GgNRIGWLNGg-- 123
gi 503083019  70 PAPALSRVTVYAVGS--Sn-cG--------WEYMTSigQLSTTCDHGGAQLRVAVQEIGY-------GnNPVAWMNGgvl 131
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
2LR4_A        71 -TAKmFKSDAILG----------QNKVVIGWDKYFEipMDALQDNSIQIKALSSGTTFVYSQKIDFE 126
gi 81418029  129 pYSL-YSSTPVCItngyynwpcaAGQIVVGFLKEYS--LDGYQNGIFSYQNTSANWPRNTMSTQISI 192
gi 123652776  86 -FEVdGTRSPVCEdgssy-vpcgNSGTTVGYVYVFD--LAGKQEGSFSFRNTSLNAPGNSLGAQIYI 148
gi 922068571 149 -SGSnYDIEYLCGsmsnl-hscsTGETVTGFLKFYS--FSGPQGGSLSANTSSIAYPFGFWSDSLYI 211
gi 503465857  64 -QLKqYDSSie----------tdSSGIAFAFIKYWN--ADGYNGGNFTYENDTLTGTYCTKSTRLLI 117
gi 696580804 124 -QTSpYQVNPVCVvsgrytescpAGSIVSGWMAYFN--ADNMSSVTFRYQSTSTNFPNRTLSTSLNI 187
gi 503083019 132 pRSAnYQTDGICIvgnqytfpcpAGYTVVGWMYYYN--LDGTDNGQFKFQDTSTNAPRNTLFTQTyi 196
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