Conserved Protein Domain Family
TM_PBP2_N

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pfam16296: TM_PBP2_N 
N-terminal of TM subunit in PBP-dependent ABC transporters
This family mainly consists of Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs, such as Binding-protein-dependent transport systems inner membrane component and Maltose transport permease MalF. It is around 580 residues in length and is mainly found in various species, such as Thermotoga, Dictyoglomus, Thermosipho, Fervidobacterium, Mesotoga and so on. The function of this family is unknown.
Statistics
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PSSM-Id: 318515
View PSSM: pfam16296
Aligned: 22 rows
Threshold Bit Score: 92.75
Threshold Setting Gi: 501003743
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81692419   91 IFMVFFSVGVMAYTIYVGFTNYGDGHNGSRDDAVAAIQRNHQERVPNAPAYNSSVAEK------DGKLALIVIDPDtKKV 164
gi 506349014  69 ILLFILTIYPMYYTLRTAFTNFGTGHLFTRQQVVQKLLTEYFYTPENPKEYDFSIFVNlkdyrpTDDFVILFTDTEtGKQ 148
gi 503537390  99 LFLLVYQVFVVLYTGWTAFTNYGDGHNSTQADAVEAILVQNETRLPDSPSYPLTVILSg------DELGFAVVDTE-GEA 171
gi 506230001  85 VFLIVYQLFMMLFTAYLSFTNYGTGHLDSKDAAIVAIQASNVVPVEGGTEYAVVPIEQ------NGTVSMLVTDPAtNQV 158
gi 506362559  90 aFLLVFQIYVVFYTGYVAFTNYGDGHNSTKEQAVEALLVQNERRVEGSESFPLVVVSD------GGELGFAIVDAD-GDV 162
gi 503604997 106 LFLLVFQVYVVGYTGYVAFTNYGDGHNSTKEQAVEALLAQNERRVEGSPAAPLTVVESd-----AGELGFAVVDES-GDV 179
gi 504259150  98 LFLVVFQLFPVLYTASTAFTNFGDGHRGSKQDAIVAIQTSSVTRVPGSAEYALSIATQgd--paTGPIVFLITDPAtKAV 175
gi 918226626  82 LFLIVFQLFPVLYTAATAFTNFSDGHRGDKQDAVVAIQTASVTRVPGSAEYALTVATTgd--paTGPLTFLVTDPGtRTV 159
gi 837903988 102 LFLIAFQVFPVLYTASTAFTNFGDGHRGSKDDAIVAVQTASVKQVPGSTEYNLTIATKgd--paTGALTFLLSDPKtKDV 179
gi 504506247  90 IFLIIFQIFPVLYTAGTAFTNFGDGHRGNKAEAITAIQTASVTRVPGSTEYQLKILAKg------dQLAFLITDPKtGKV 163

                 ...
gi 81692419  165 QAG 167
gi 506349014 149 YIa 151
gi 503537390 172 QVG 174
gi 506230001 159 RIG 161
gi 506362559 163 EAG 165
gi 503604997 180 RVG 182
gi 504259150 176 SIG 178
gi 918226626 160 SAG 162
gi 837903988 180 FAG 182
gi 504506247 164 SLG 166
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