Conserved Protein Domain Family
PHC2_SAM_assoc

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pfam16616: PHC2_SAM_assoc 
Unstructured region on Polyhomeotic-like protein 1 and 2
PHC2_SAM_assoc is a natively unstructured region on Polyhomeotic-like proteins 1 and 2, that lies immediately upstream of the SAM domain, pfam00536. The function is not known.
Statistics
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PSSM-Id: 318757
View PSSM: pfam16616
Aligned: 14 rows
Threshold Bit Score: 64.8802
Threshold Setting Gi: 597786967
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941787859 787 NVGCTKRVGLF-------RPEKNKTTN---------RWRKRPNS--RSSIEAKKQkmspprPQQTQGGSISSPHASQP-- 846
gi 410925324 706 NVGCTKRMGLF-------HPEKNKQVN---------NWRRKSQS--RASIEAKKQklt-lsPQQTQGSSVSSPHASQP-- 764
gi 597779628 678 NVGCSKRIGLF-------HPDRSKTAN---------RWKRRSHSrgRRSTEAKKQkl--svSQQSQGESVSSPLPSQP-- 737
gi 992201818 429 NVGCTKRIGLFprrptpeNPKKQKASN-------------NTHH--NTSSEAKKQih---sTQTAMLGSVSSPRLSHL-- 488
gi 973211591 138 NVGCTKRVGLF-------HPDRSKNAKsdgpkhrrrRSRKGSLQ--NLNKETKKQqa--ptPLQSLGGSVSSPPPSHP-- 204
gi 649118470 135 NVGCTKRVGLF-------HSDRSKLQKagaathnrrRASKASLP--PLTKDTKKQ------PTGTVPLSVTAALQLTH-- 197
gi 545491305 135 NVGCTKRVGLF-------YPDESKLQMagitthnrrRASKASLP--TLTKDTKKQ------PTGIMPLSVTAALQLTH-- 197
gi 637380134 144 NVGCTKRVGLF-------HPDRNKPPKqsatphnrrRNSK---P--ALGKESKKQappalaP-TSGPISGSGSLQQQQhl 210
gi 512825118 677 NVSCSHQFRL--------KRKKLKELQeaggvrarrRGPRRNSS--EIARA-----------------KIQGKRMR---- 725
gi 17389416  271 NVSCSHQFRL--------KRKKMKEFQeanyarvrrRGPRRSSS--DIARA-----------------KIQGKCHR---- 319
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941787859 847 ----SQEESSPCSDMSSYEEPPSPLSAASS-----------GPrapapasaqvpVHrq-psRTSEPEACAGRDAALLNER 910
gi 410925324 765 ----SQEESSLCSDMSSCEEPPSPLSAASSgalapppapsqVP-----------VHrh-psRASDLESCPERDAALLRQR 828
gi 597779628 738 ----SQGESSPCSDISSYEEPPSPLSAASS-----------GPvgpp-----------rgvTTPEP-----EELPLLSQH 786
gi 992201818 489 ----SHGESTQCSDMSSYEEPPSPLSVASP-----------GAqr-------lrRE-----RGLEPGESHSRELPLLTQH 541
gi 973211591 205 ----SQGESSQCSDISSYEEPPSPLSAASS-----------GApr-------rpGD-----RGPEAPEGHTRELPLLTQH 257
gi 649118470 198 ----SQEDSSRCSDNSSYEEPLSPISASSS-----------TSrr-------rqGQ-----RDLELPDMHMRDLVGMGHH 250
gi 545491305 198 ----SQEDSSRCSDNSSYEEPLSPISASSS-----------TSrr-------rqGQ-----RDLEFPDMHMRDLMGMGHH 250
gi 637380134 211 ssrgGQEDSSRGSDNSSYEEPLSPLSASSS-----------ASrrrr----rcpSE-----REVELPDVRLRDLVAIGHH 270
gi 512825118 726 ------EDSSRGSDNSSYDEAFSPNSPAPP-----------SCrt-------phGDrdgstPTGGP---SNSDLLGINPM 778
gi 17389416  320 ----GQEDSSRGSDNSSYDEALSPTSPGPL-----------SVra-------ghGErdlgnPNTAP---PTPELHGINPV 374

                 ...
gi 941787859 911 FLP 913
gi 410925324 829 FLP 831
gi 597779628 787 FVp 789
gi 992201818 542 FLP 544
gi 973211591 258 FLP 260
gi 649118470 251 FLP 253
gi 545491305 251 FLP 253
gi 637380134 271 FLP 273
gi 512825118 779 FLS 781
gi 17389416  375 FLS 377
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