Conserved Protein Domain Family
zf-C2H2_assoc3

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pfam16637: zf-C2H2_assoc3 
Putative zinc-finger between two C2H2 zinc-fingers on Patz
zf-C2H2_assoc3 is a partially unstructured region on Patz or POZ-, AT hook-, and zinc finger-containing proteins of higher eukaryotes. It lies between the two C2H2-type zinc-fingers towards the C-terminus of these proteins and may well be an unusual zinc-finger itself.
Statistics
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PSSM-Id: 318778
View PSSM: pfam16637
Aligned: 9 rows
Threshold Bit Score: 86.8698
Threshold Setting Gi: 512811614
Created: 31-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736197659 532 GtpylmgrqCSVED----GQENTGKCPHLESEESDPSFGELSNGDELKSPQKP----------DepelempslaCNGAS- 596
gi 768945365 529 H--------MGRQClvedGQENTGKCPHLESEESDPSFGELSNGEDLKSPQKP----------DgpelemqqlaCNGAP- 589
gi 410919777 477 Gthn--ycgICNKD----GQENTGKCPHLESEESDPSFGELSNGEDLKSPQKP----------DgpelemqqlaCNGAP- 539
gi 348521896 485 Gthn--ycgICNKD----GQENAGKCPHLESEESDPSFGDLSNSEELKSPHKT----------DgpelempslpCNGAS- 547
gi 512811614 494 AalfhcvrtCGVKE----GD----KC-HHGEQESSDSYGDLSESSDLKSTEKQ----------N----------ANGSYt 544
gi 431920919  72 Gpsn--fcsICNRE----GQ----KCSHQDPIESSDSYGDLSDASDLKTPEKQ----------S----------TNGSF- 120
gi 699580454  33 GaafhcvrtYGIKE----GQ----KCSHSDPIESSDSYGDLSDTSDLKTPEKQ----------S----------TNGSF- 83
gi 556948864 463 segpsnfcsicnRD----GMSDGEKCPHQEQHDNSDSFGEFSDTSDLHSPTKQ----------N----------ENGPF- 517
gi 765169012 329 slifvsflsafasD----GQEDDRKCPHLDSEESDASFREMSNGDELKSPHKSdgpeqemsslD----------CNGAS- 393
                         90
                 ....*....|....*....
gi 736197659 597 TGALSSPEGSKAKTDPEKK 615
gi 768945365 590 GAPLGSPEGSKPKTDPEKK 608
gi 410919777 540 GAPLGSPEGSKPKTDPEKK 558
gi 348521896 548 AGALVSPEASKAKMDPEKK 566
gi 512811614 545 ACDLVIP--KKTEAESEKR 561
gi 431920919 121 SCDMAVP-KNKMESDGEKK 138
gi 699580454  84 SCDMAVS-KNKMETEGEKK 101
gi 556948864 518 SCDPVVNPKSDRDLEAERK 536
gi 765169012 394 AELLASPDGSKSKAEPEKR 412
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