Conserved Protein Domain Family
Apocytochr_F_N

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pfam16639: Apocytochr_F_N 
Apocytochrome F, N-terminal
This is the N-terminal domain of cytochrome f. It is a soluble lumen-side domain.
Statistics
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PSSM-Id: 318780
View PSSM: pfam16639
Aligned: 29 rows
Threshold Bit Score: 219.465
Threshold Setting Gi: 554669309
Created: 29-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123728201  43 PFWAqENYASPREATGKIVCANCHLAKKPTEVEVPHSVLPDTVFKAVVKIPYDRSSQQVLGDGSKGGLNVGAVLMLPDGF 122
gi 193805955  32 PVFAqQNYSNPRAANGKLACANCHLNQKAIEIEAPQAVLPNSIFEVEIKVPYDTTKQQLGANGKKADLNVGGILMLPEGF 111
gi 6685374    37 PIFAqQNYENPREATGRIVCANCHLANKPVDIEVPQTVLPDTVFEAVVKIPYDMQLKQVLANGKKGALNVGAVLILPEGF 116
gi 122222828  26 PMYAqQGYENPREATGRIVCANCHLAQKPVDIEVPQAVLPDSVFEAVVKIPYNQEVKQVLGNGKKGGLNVGAVLILPDGF 105
gi 123765472  26 PYYAqMAYDNPREATGKIVCANCHLNAMPTRAEVPQAVTPGQVFTIKVGIPYDLSKQQVLADGSKGGLNVGAVVVLPEGF 105
gi 81707944   30 PSFA-AGYEEARESSGKIVCANCHLAVKPTEIEVPQSVLPGKVFDLKIHVPYDTKIQQVGADGSPAPMQIGAYIQLPEGF 108
gi 668349517  60 PIFAqQNYENPREANGRIVCANCHLAEKPVEIEIPQAVLPDTVFEAVVKIPYDKQIKQVLGNGKKGGLNVGAVLILPEGF 139
gi 302824485  15 PISAqQGYENPREATGRTVCANRHSAKKPVDIEVPQPVPPDTAPEAVVRIPYDARVKQVLANGKKGAPNAGAVPIPPEGS 94
gi 242620115  31 PIYAqQAYANPREANGRIACANCHLAQKPTAIESPSAVLPDTVFEAIVKIPYDVSKKQLVASGDRGPLNVGAVVILPDGF 110
gi 269101116  33 PIYAqQGYTNPRAANGRIACANCHLAEKPVQIESPKAVLPNKVFEAAVKIPYSKDAKQILGNGQLSGLNVGAVVILPEGF 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123728201 123 KLAPEDRISEELKEEIGN------VYFTNYSADQENIILVGPLPGDD--HQEIVFPVLSPDPA-KDKNVFFGKYQIHVGG 193
gi 193805955 112 KLAPKNQIPAEVKEKNKG------VFISPYSSEFDNILVVGPIAGKT--HQELIFPVMAPDPE-KNSDIKYLTYPFYAGG 182
gi 6685374   117 ELAPPDRISPEMKEKIGN------LSFQNYRPNKKNILVIGPVPGQK--YSEITFPILAPDPA-TNKDVHFLKYPIYVGG 187
gi 122222828 106 TMAPADRMSAELKEKVGK------LYFQPYSEDKQNILIVGPVPGKK--YSEMTFPLLSPDPA-TNKKVNYLTYPIYLGG 176
gi 123765472 106 RLATEAEMTEEQRQETAE------TYITPYSDAKPNILLVGPLPGEQ--HQEIVFPVVAPDPK-EDPSVAFMKYRVYIGA 176
gi 81707944  109 TVADEKEWSAEAKESIEKyggvtpLYADKP--ERSNILIINQIDGSTvpGQEFIVPVKPPDPNaKDAKVNFGKYGVYVGA 186
gi 668349517 140 ELAPPDRIPEEMKAKVGK------LYFQPYSAEQKNIYVVGPVPGKK--YSEMVFPILSPDPT-KNKSVSYLKYPIYVGG 210
gi 302824485  95 KLAPPERITTEIRERVGN------LFFQAHRPNKTNILVIGPVPGAK--HSEIASPILPPDPA-TEEGAHLLKYPIYVGG 165
gi 242620115 111 KLAPPSRVPSEVKAKNKG------VYISPYSSKSENILVVGPILGDK--NREIAFPVLSPDPA-KDPKVKFLKYPIYVGA 181
gi 269101116 113 KLAPNNLISKEIKEKSKG------VFISPYSATQENILVVGPIAGDT--HQEIIFPVLSPDPA-TNKKINFLKYPIYVGA 183

                 ...
gi 123728201 194 NRG 196
gi 193805955 183 NRG 185
gi 6685374   188 NRG 190
gi 122222828 177 NRG 179
gi 123765472 177 NRG 179
gi 81707944  187 NRG 189
gi 668349517 211 NRG 213
gi 302824485 166 NRG 168
gi 242620115 182 NRG 184
gi 269101116 184 NRG 186
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