Conserved Protein Domain Family
HisKA_7TM

?
pfam16927: HisKA_7TM 
N-terminal 7TM region of histidine kinase
HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.
Statistics
?
PSSM-Id: 319011
View PSSM: pfam16927
Aligned: 161 rows
Threshold Bit Score: 72.2937
Threshold Setting Gi: 495360643
Created: 30-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123590243   21 STFLGFslltawL-----LRqeyfFGREYFLSa-VCGVLWW-LAFA-GLEMA-TPGLGCKMA-FGSLaw----pAIALVP 86
gi 489627828    8 tifiiaiaailsfiivslrrgnarliHKLYFIl-AAGLMIW-LAALiGIRLT-DPNNMDMMFiWDSIty----lGGPFGT 80
gi 505826858   10 ISMIIAailmytVgllwfTDrv-nRQVRGLFVs-GIALWFW-TVFS-AFAML-VKDTPYYPF-IYTIri----iFLSISP 79
gi 523977948   14 sIAVMDgvlsvkSf----QKnk-tTGRYLGFAc-MWATII--DISY-LCSIL-SKSYGFVSV-MSSIyf----mGIDGVL 78
gi 501154223   16 lfllfsilllfcytiyisfkvsksiirdkFYFf-LASLFFW-MIAK-ACRLV-VTENSLIWL-VIIIqy----iGYFGFQ 86
gi 524080441   16 IIAATDillavkSf----EKnk-tTGRFLGFAc-MGAAIV--DISY-LISII-SDSYMCMAI-MSSIyf----iSIDFML 80
gi 167776744   13 LAFSFNlglglfVlk-sfRLn----lVKYLLIl-VFGSMLW-TGFY-GIDFIyITT-TFHRT-FISLly----mGVAISN 78
gi 524074680   15 MIAITDillaiqSvkknkTT------GRFLGLacAAAALV--DISY-LISIIsKSY-LNMSI-MSSVyf----vGIDFML 79
gi 524156748   11 IFALVVailvlkSyrkgtES------AKKLGIamLMNFLM--IGTY-TLNLT-----SGYLI-IKSIgcsltftLMDLML 75
gi 493181248   15 MSTLPAlysaytVydkrrKP------AIQWFIlfMVLAAAWaFLYA-TMNLV-----PAAGL-TYAIanv---fwTVVTA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123590243   87 V--SWFLFLRHYC-----QgGr--IG---Gr---RLE------------AGI-LGgivLSVTA---------IV--AT-N 126
gi 489627828   81 A--WMVLISLVFV-----K-Gl--DHlpgRy---L-L------------FLI-PP---AIVNI---------LV--WT-N 118
gi 505826858   80 W--CFLWFILELS-----G-St--VLnflPv---RII------------CIL-IP---FADSI---------LL--AT-N 118
gi 523977948   79 I--SLFIFTTYFTkgafsG-Le--KVlt-----rICL------------LYA------LFDFV---------VF--AV-N 118
gi 501154223   87 Y--SLFIFSLNFY-----G-Ge--Ema-rKa---QWV------------AAI-LP---ILGLI---------IV--LT-N 124
gi 524080441   81 V--SLLIFTVYFTk----G-Kf--SGygkWm---VAF------------CFL-YC---IYELI---------VF--AV-N 120
gi 167776744   79 V--GMVLVSIEFT-----N-NrqlLT---Kr---FWV------------ILAlQP---LFTLAvcv---ldpLFktLTlD 126
gi 524074680   80 V--CLLMFTVYFT-----KgR---FS---KygrlaVGfcylys-fyelvIFAiNPfkeIAIGYverdtfi---------- 135
gi 524156748   76 F--FYYDYAMAFV-----GwEnrt--------pkWIKiafgayifidgiFMMiNPfdqVAVSYm---------------- 124
gi 493181248   79 TggAFFLFAYEFA-----YkQplsn---------------------rvaVLFfLP---AIVFFtlswtnpgdIV--YTaE 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123590243  127 P-----------WHglfylpgthlavidgrlseVFlHGPLF-Y--G-----ATALLYVFL-LSSVGIAAfgafraa---r 183
gi 489627828  119 P-----------LHhliyqvf-------didsskIvFGPLM-F--V-----SGAVSYCYL-ASAVAIMIrfavksss--k 169
gi 505826858  119 L-----------IHhriya---------vyqypIPiYGPDY-I--I-----HGVMAYSAM-LFCVIFMFiyviknmkekp 169
gi 523977948  119 P-----------FChvaidyir---rntlisfyRYeMKLLY-Q--L-----HLVFSYVVV-VCILFLLIrkicttp---n 172
gi 501154223  125 P-----------IHhmffisl---------didhekRGMFY-Y--F-----SSVIHHVYI-IASIFILIcamhirifcrr 175
gi 524080441  121 P-----------FMeiaieykp---rdtliakySYhMKPLY-D--L-----HLIFSYVMV-LLVVGLLIrkickip---h 174
gi 167776744  127 T-----------Yltsidgrv--------qwiqetnIGGFI----A-----SYLISFFWS-VFVAILLFrgilksk---s 174
gi 524074680  136 ------------------------------agyvyhMKPLYyM--------HLLFSYSLV-VIVLFLLVrkmcrip---r 173
gi 524156748  125 -------------He--------------------sFGDGYiLtyVpqipfHIHIAFDMMmIAATIILLslkcgetp--r 169
gi 493181248  128 YtvgtdgvlqvgFp----------------------QGILFvS--I-----VQGYGYLMT-IASTALFFaeaihsd---g 174
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 123590243  184 aqrpmlLMML---FGTLAPI-VANlayvlf-----katvfgFDPTPFAFAFVLLVLTWAIYGNRTFDLT 243
gi 489627828  170 lymrqgFLFA---IGALIPL-VVNmmatfk------igslgIEATPLAFTATIILHGFAIFYFHMLDIk 228
gi 505826858  170 ivlaqgL-------GFLLLT-GVNiiytak------iinfaHDIGPYTFFFMYILFAFSTHRSRLFNfr 224
gi 523977948  173 eyrpqySMIV---VGLLAVI-GINavflfip---gdnvfslLDYSICCYSLMSFLIYWNCFDYsthaml 234
gi 501154223  176 nkkiqiILHI---TAAISVF-FMFlfwlqtvgilpklsflkIDGLVLKICLAFFLIILPTLGFQFLDIn 240
gi 524080441  175 eyrwqyLSVI---IGILIIV-GTNaiflflp---gesvvnlLDYSIGGYSVVSFIIYWSCFDYsthgml 236
gi 167776744  175 ternryLLIL---ISFLFIW-VAAilhkvg-----irplpgMNITAVMCTMQAIMIFFAIGYYRMFDLV 234
gi 524074680  174 eyrsqySCVI---IGIAMIV-LVNgvflflp---gnnvynlLDYSICGYSLISFLIYWSCFNYsthgml 235
gi 524156748  170 vyrkryYGPI---IGMLLAV-VINfvylag------iipfiMDPTILLYVFVGFLLYFYTFnylpsvtl 228
gi 493181248  175 khrrraVTLAiffIGVLVATtLTIvdyl----------ppyYDGTALLYGFAGIYFAHSVNRHGFLEFS 233
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap