1W25


Conserved Protein Domain Family
GGDEF

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smart00267: GGDEF 
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diguanylate cyclase
Diguanylate cyclase, present in a variety of bacteria.
Statistics
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PSSM-Id: 128563
View PSSM: smart00267
Aligned: 61 rows
Threshold Bit Score: 82.6805
Threshold Setting Gi: 1176698
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W25_A        286 ELAVTDQLTGLHNRRYMTGQLd-SLVKRATLGGDP-VSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA---- 359
gi 158424709  313 RLAFTDMHTGLSNRTGLLRLC--TGRPTRP------SGAVVLMLRDLGVVKTSFGDDWAEPMIVETANLLSRMLPQ---- 380
gi 117625812  229 ENAMRFPVSDLPNKALLMEMLe-QVVARKQT-----TALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSP---- 298
gi 320176249  299 RLAYVDPVVHLPNVRALNRAL--RDAPW--------SALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEP---- 364
gi 16331738   429 QQTAYDPLTQLPNWIIFNRQLtlALLDALYEGKM--VGVLVIAMDRFKRINESFGHKTGDGLLQEVADRLNQKLSPlaay 506
gi 16077495   130 SYVAVDRVTGFDNKQRMKLELs-EEIKRAERYGNS-FVFLLLHMHYFKEFKSLYGEKETDRLFQYVGQQIRTSVRE---- 203
gi 291486690  141 DRKFRVVIKRDERLLYFFDVT--EQIQIEKLYENErTVLAYIFLDNYDDVTQGLDDQTRSTMNSQVTSLLNAWAQEy--- 215
gi 333001533   43 LQALTDPLTLLPNFRALEQAP---EQEAG-------KSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQE---- 108
gi 1176698    267 LVNRRETAGGFLPRDVFMRHLe-QITRAREAQGGV-HGLVIIDVDGSQGILNALGLTATEKLLRELESLLSKTMTP---- 340
gi 323942160  382 QLIQFDPMTGLPNRNNLHNYLd-DLVDKAVS-----PVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKP---- 451
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W25_A        360 IDLPCRYGGEEFVVIMPDT-ALADALRIAERIRMHVSGSPFTvahGR-EMLNVTISIGVSAT--AGEGDTPEALLKRADE 435
gi 158424709  381 EACLGRTGESEFTVVTWQP---GAAAELAETLIGRLRSAIES---GG-RRFYLRVGLGVVE-----RPGDATYLLRDAEM 448
gi 117625812  299 RMILAQISGYDFAVIANGVqEPWHAITLGQQVLTIMSERLPI---ER-IQLRPHCSIGVAMF---YGDLTAEQLYSRAIS 371
gi 320176249  365 GEDVYQLSGNDLALRLNTE-SHQERITALDSHLKQFRFFWDG---MP-----MQPQIGVSYCyvrSPVNHIYLLLGELNT 435
gi 16331738   507 SPLLSRWHGDGFTILLTQIsDNQEMIPLCERLLSTFQEPFFL---QG-QPIYLTASMGISTA--PYDGETAESLLKFAEI 580
gi 16077495   204 TDKKFRPSDERIGIVLTHT-PAEHMPAVLTKLKKQLDTYQLE---NGk---YVSLTFHVCYLpyRNDIQTADQFLEELEN 276
gi 291486690  216 GIFLKRTSSERFIAVLNEH-ILTELENSKFSILDEVREKTSF---DG---VALTLSVGVGA-----SVSSLKELGDLAQS 283
gi 333001533  109 NEKLYQLPGSELLLVLSGP-ETEGRLQHMVNILNSRQIHWNN---TG-----LDMGYGAAWG---RFDGNQETLQPLLGQ 176
gi 1176698    341 EESATRMDDFRYGLLAKRE-TLSKLEALASTLCQQLSGLKPQ---DRdIKLEVSVSVGVGLF--DPPADDAFAMVSRAEK 414
gi 323942160  452 DQYLCRIEGTQFVLVSLEN-DVSNITQIADELRNVVSKPIMI---DD-KPFPLTLSIGISY----DLGKNRDYLLSTAHN 522
                         170
                  ....*....|....*.
1W25_A        436 GVYQAKASGRNAVVGK 451
gi 158424709  449 AARDCRDGHLLHFAEH 464
gi 117625812  372 AAFTARHKGKNQIQFF 387
gi 320176249  436 VAELSIVTNAPENMQR 451
gi 16331738   581 ALTRAKCQGKNTYQFY 596
gi 16077495   277 EMMMNEL--------- 283
gi 291486690  284 SLDLALGRGGDQVAIK 299
gi 333001533  177 LSWLAEQSCAHHHVLA 192
gi 1176698    415 AAAGAKSAGGNQAHVW 430
gi 323942160  523 AMDYIRKNGGNGWQFF 538
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