3LVG,3LVG,1XI4,1XI4,1XI4,1XI4


Conserved Protein Domain Family
CLH

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smart00299: CLH 
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Clathrin heavy chain repeat homology
Statistics
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PSSM-Id: 128594
View PSSM: smart00299
Aligned: 47 rows
Threshold Bit Score: 73.8475
Threshold Setting Gi: 6323177
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3LVG_A        223 LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-E--R--A--HMGMFTELAILYSKFKPQKMREHLEl-------- 287
gi 19115060   534 MFNSNPSINLEKIVDIFMSQNLVQQATAFLLDALKDdN--P--E--HSHLQTRLLEINLINAPQVADAILGn-------- 599
gi 19115060  1418 laaltPRIDHPRVIRIFEKSENTPLILNFMVAIQHL-N--I--QavNHAYNDLLIEMEDYQSLQDSIENYDhfdaialar 1492
gi 259146308  543 nPETASQIDIEKIADLFFSQNHIQQGTSLLLDALKG-Dt-P--D--QGHLQTRVLEVNLLHAPQVADAILGn-------- 608
gi 6321232   1429 LTSLTPRLDIPRTVKIFSKSDNLPLIKPFLINVLPK-N--NsvV--NQAYHDLMIEEEDYKALQDAVDSYDk-------- 1495
gi 1335862    550 qMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKP-Nl-P--E--HGYLQTKVLEINLVTFPNVADAILAn-------- 615
gi 1335862   1436 LNVLALRVDQARVVDIMRKAGHLRLVKPYMVAVQSN-NvsA--V--NEALNEIYVEEEDYDRLRESIDLHDn-------- 1502
gi 66818048   537 keEGGPYIDANQVVELFSARNMIQETSNFLFAILDG-Dr-P--Q--DANLQTKLLEINLLHAPQNADAIMGg-------- 602
gi 66818048  1424 LSVLSPRIDHTRAVTLIRSLGHLPLVKPYLVSAQDQ-N--V--AalNEALNELYVEEEDYESLRSSIDANSnfgtialaq 1498
gi 1359719   1423 llvlSPRLDHTWTVSFFSKAGQLPLVKPYLRSVQSH-NnkS--V--NEALNHLLTEEEDYQGLRASIDAYDnfdnislaq 1497
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3LVG_A        288 ---F-----------WSRVNIPKVLRAAEQAH-L-WAELVFLYDKYEEYDNAIIT--MMNHP--T--DAwkeGQFKD--- 342
gi 19115060   600 --qM-----------FTHFDRAVIASLCERAG-L-VQRALELYDKPADIKRVIVH--SNLL------NP---EWLMN--- 650
gi 19115060  1493 rleK-----------HSLLEFRRIAAYIYRKN-KrWTQSIELSKQDRFYKDAIIT--ARDSDqtT--IA---EDLMK--- 1550
gi 259146308  609 ---Ni----------FSHYDKPTIASLSEKAG-L-YQRALENYTDIKDIKRCVVH--TNALP------I---DWLVG--- 659
gi 6321232   1496 ---FdqlglasrlesHKLIFFKKIGALLYRRNkK-WAKSLSILKEEKLWKDAIETaaISQDP--K--VV---EALLT--- 1561
gi 1335862    616 --gM-----------FSHYDRPRIAQLCEKAG-L-YVRALQHYTELPDIKRVIVN--T--HA--I--EP---QSLVE--- 666
gi 1335862   1503 ---FdqiglaqkietHELLEMRRVAAY--------------IYKKAGRWKQSIEL--CHKKD--T--LY---KDAMEtvs 1556
gi 66818048   603 --qK-----------FTHYNRLRIGGLCEKAG-L-YQRALEHYTDLADIKRVLSH--AGHM---V--NQ---EFLVS--- 654
gi 66818048  1499 kleK-----------HELLEFRRIAAYLYKKN-NrWAQSVELSKKDKLYKDAIQS--ASDSK--NpaIG---EELLQ--- 1556
gi 1359719   1498 qleK-----------HQLMEFRCIAAYLYKGN-NwWAQSVELCKKDHLYKDAMQH--AAESRdaE--LA---QKLLQ--- 1555
                         170       180       190
                  ....*....|....*....|....*....|....*.
3LVG_A        343 -------------IITKVANVELYYRAIQFYLEFKP 365
gi 19115060   651 -------------YFSRFSPDEVYDYLREMLRSNLR 673
gi 19115060  1551 -------------YFVEIGNYECFAAILYTCYHLLR 1573
gi 259146308  660 -------------YFGK-LNVEQSLACLKALMDNNI 681
gi 6321232   1562 -------------YFVETGNREGFVALLYAAYNLVR 1584
gi 1335862    667 -------------FFGT-LSREWALECMKDLLLVNl 688
gi 1335862   1557 qsgdrelveellvYFIDQGKKECFASCLFVCYDLIR 1592
gi 66818048   655 -------------YFGS-LNPEDRMECMRDFLRTNP 676
gi 66818048  1557 -------------YFVDQQNNSAFAACLYTCYDFLK 1579
gi 1359719   1556 -------------WFLEEGKRECFAACLFTCYDLLR 1578
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