2DLL


Conserved Protein Domain Family
IRF

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smart00348: IRF 
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interferon regulatory factor
interferon regulatory factor, also known as trytophan pentad repeat
Statistics
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PSSM-Id: 128642
View PSSM: smart00348
Aligned: 20 rows
Threshold Bit Score: 93.1659
Threshold Setting Gi: 18653871
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2DLL_A         8 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNrEEDAALFKAWALFKGKFREGIDKP-----------DP- 75
gi 82047753   91 SIKDWIVCQVNSGKFPGVEWEDEERTRFRIPVTPLADPCFEwRRDGELGVVYIRERGNMPVDASFK-----------G-- 157
gi 307697401   7 RILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQqE-DFGIFQAWAEATGAYVPGRDKP-----------DL- 73
gi 208966578  13 LFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLS-EADARIFKAWAVARGRWPPSSRGG-----------GPp 80
gi 74204777   11 LFGDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLD-EEDAQIFKAWAVARGRWPPSGVNLpppeaeaaerrER- 88
gi 18653866   12 SLRGWLVECCETGRHPGMRWVDEERTLIRIPWNHDRGSRGVeEAEKNIFIDYCRSRGILHAAGREL-----------TAk 80
gi 7330053    16 GLRAWLLDCCDNDKHPGMHWLDEEKTLVRLPWNHLKGAGGVsDDERNMYLDYCQFKGIRQTGNRRL-----------SVr 84
gi 7330048     7 DIRAWLVAAVESGEYRGLVWENEDKTVVRVPWNKVTADRSVwNSEK-FFDDYCNMRGICQGEKPSH-----------YGr 74
gi 18653868   16 ALKEWLTFKADSGLYPGLFWADEQKTRLVLAATPPSFPNYDyQRDGQHYDAYCELRHIPLPSGRSR-----------L-- 82
gi 18653864   16 GLREWIVTHANLATYSGLFWADDEKTRVVLATTTPWSVGFDyLRDGKMYEDYCNQRNIPLPSGRSR-----------LG- 83
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
2DLL_A        76 --------PTWKTRLRCALNKSNDFEELVERSQlD-ISDPYKVYRIVPE 115
gi 82047753  158 --------TRGRRRMLAALRRTRGLQEIGKGIS-Q-DGHHFLVFRVRKP 196
gi 307697401  74 --------PTWKRNFRSALNRKEGLRLAEDRSK-D-PHDPHKIYEFVNS 112
gi 208966578  81 peaetaerAGWKTNFRCALRSTRRFVMLRDNSG-D-PADPHKVYALSRE 127
gi 74204777   89 --------RGWKTNFRCALHSTGRFILRQDNSG-D-PVDPHKVYELSRE 127
gi 18653866   81 e------cKNWLSSAIRHSQTVSDVSTKDNLST-P-YPDRCRIIRLLPI 121
gi 7330053    85 e------cKNWLASAIRHSQTVEDVSTEENLSA-P-APNRCRVIRLLPI 125
gi 7330048    75 f------rKMRFLYDMRHHKSIRELKFINKAYG-R-PGARYRLFRLLPE 115
gi 18653868   83 --------CQARGRLLGAVRKSKYFEEDKEFPT-DqFPFTALVFRLRSS 122
gi 18653864   84 ---------QAKARLLGAIRKSAYFIEEKDVLR-RsFSFANVVFRLRSD 122
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