1UB1


Conserved Protein Domain Family
MBD

?
smart00391: MBD 
Click on image for an interactive view with Cn3D
Methyl-CpG binding domain
Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Statistics
?
PSSM-Id: 128673
View PSSM: smart00391
Aligned: 11 rows
Threshold Bit Score: 85.8858
Threshold Setting Gi: 75098832
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1UB1_A         30 GPMYDDPtLPEGWTRKLKQRKSG--RSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNd-------FDFTVTGR 100
gi 74966904   326 EAMLRLP-LQLGWRRQTCVRSIA--SAGVKGDVSYFAPCGKKLSTYSEVVRYLTKNSIHYITRDn-------FLFNTKLV 395
gi 25091206   614 KNPLLVP-LLYDFRRMTARRRVN---RKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEm-------FCLDPYVL 682
gi 75098832   106 IDKPGLPrTPRGFKRSLILRKDY-----SKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALL--------GDFNFTVP 172
gi 74765852    38 ATSYNGN-LAPGWRRLTN-----------NNEVAYISPSGKTLRTQFQIKDYLLTQGTCKCGLPcplrpeylFDFNAQVP 105
gi 2183083    191 PEEVRLP-LQHGWRREVRIKK-G--SHRWQGETWYYGPCGKRMKQFPEVIKYLSRNVVHSVRREh-------FSFSPRMP 259
gi 4505121     79 GTECRKS-VPCGWERVVKQRLFG--KTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPEd-------FDFTVLSK 148
gi 82177781    93 GPMYDDPtLPEGWTRKLKQRKSG--RSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNd-------FDFTVTGR 163
gi 335282297    3 RKRWECPaLPQGWEREEVPRRSG--LSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLST-----------FDFRTGKM 69
gi 124013742    3 EDWLDCPaLGPGWKRREVFRKSG--ATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTL-----------FDFKQGIL 69
gi 331028974  833 NSPIHTP-LLCGWRRIMYTMSTGkkRGAVKKNIIYFSPCGAALHQISDVSEYIHVTRSLLTI-Dc-------FSFDARID 903

                  ....*..
1UB1_A        101 GSPSRRE 107
gi 74966904   396 IGEFIVP 402
gi 25091206   683 VDRKFQP 689
gi 75098832   173 KVMEETV 179
gi 74765852   106 NQPLKLP 112
gi 2183083    260 VGDFFEE 266
gi 4505121    149 RGIKSRY 155
gi 82177781   164 GSPSRRE 170
gi 335282297   70 LMSKMNK 76
gi 124013742   70 CYPAPKA 76
gi 331028974  904 TATYITV 910
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap