Conserved Protein Domain Family
BASIC

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smart00520: BASIC 
Basic domain in HLH proteins of MYOD family
Statistics
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PSSM-Id: 128794
View PSSM: smart00520
Aligned: 13 rows
Threshold Bit Score: 120.252
Threshold Setting Gi: 3721611
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158323694   1 MELLSPplrdidltgpdgslCSFETADDFYDD-PCFDSPDLRF-FEDLDPR------LV--------HVGALLKpeehah 64
gi 71896337    1 MEVMDS--------------CQFSPSELFYDS-SCLSSPEGEF-PEDFEPRe-----LP--------PFGAPAP------ 45
gi 27806531    1 MDMMDG--------------CQFSPSEYFYDG-SCIPSPDGEF-GDEFEPR------VA--------AFGA-HK------ 43
gi 147905392   2 MELFETs-------------PYFFSDQRFYDN-DNYFSARLPT-YEQTGFQdr--gtAG--------ICADGVL------ 50
gi 3914106     1 MDLVDS--------------CQFSPSEFFYDS-SSMPSPDDDF-VEDFDSR------LG--------RFRV-HP------ 43
gi 213623719   1 MEMVDS--------------CHFSPSEFFYDS-SCIPSPEEGY-TEDYEHG------MS--------IYGA-HK------ 43
gi 3915780     7 MEMTEGs------------lCSFTAADDFYDD-PCFNTSDMHF-FEDLDPR------LV--------HVGGLLKpeeh-- 56
gi 45383748    1 MELFETn-------------PYFFPEQRFYDG-ENFLGSRLQG-YEAAAFPer--peVT--------LCPES-------- 47
gi 21071082    1 MELYETs-------------PYFYQEPHFYDG-ENYLPVHLQG-FEPPGYEr-----TE--------L---SLS------ 43
gi 127053      1 MELLPPalrdme--etegslCAFPTPDHFYDD-PCFNSSDMSF-FEELEPR------LV--------HVTLLKR------ 56
gi 148224520   2 MDLFETn-------------SYFF----YLDG-DNGAFQQLGV-ADGSPVYpgsegtLS--------PCRDQLPv----- 49
gi 185135658   1 MELFETn-------------PYFFPDQRFYEGgDNFYQSRLPGgYDQGGYQe-----RGgsmmglcgGLSGGVG------ 56
gi 3721611     1 MDV-------------------FSTSQIFYDS-TCASSPE--A-LEFGPG------------------------------ 27
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 158323694  65 fstavHPGPGAREDEHVRAP----SG--HHQAGRCLLWACKACKRKTTNADRRKAA 114
gi 71896337   46 -----TEPACPEEEEHVRAP----SG--HHQAGHCLMWACKACKRKSTTMDRRKAA 90
gi 27806531   44 -----ADLQGSDEDEHVRAP----TG--HHQAGHCLMWACKACKRKSTTMDRRKAA 88
gi 147905392  51 -----LQGSG-IEDKISPHPnv-tQQ--EHCPGQCLPWACKVCKRKTVSMDRRKAA 97
gi 3914106    44 -----DELQCSDEEEHVRAP----SG--HHQAGHCLLWACKACKRKSSTMDRRKAA 88
gi 213623719  44 -----KDLEESDEDEHVRAP----IG--HHQAGNCLMWACKACKRKSSTTDRRKAA 88
gi 3915780    57 -phtrAPPREPTEEEHVRAP----SG--HHQAGRCLLWACKACKRKTTNADRRKAA 105
gi 45383748   48 --------RGALEEKDSTLP--------EHCPGQCLPWACKICKRKTVSIDRRRAA 87
gi 21071082   44 -----PEARGPLEEKGLGTP--------EHCPGQCLPWACKVCKRKSVSVDRRRAA 86
gi 127053     57 -----GPRHEEEEEEHVRAP----SG--HHQAGRCLLWACKACKRKSSGADRRRAA 101
gi 148224520  50 -----DAGSDRSEEEHVLAP----PGlqPHCPGQCLIWACKTCKRKSAPTDRRKAA 96
gi 185135658  57 -----VGLGGGMEDKATPSGlsphPE--PHCPGQCLPWACKLCKRKTVTMDRRKAA 105
gi 3721611    28 -----GELAGSEEDEHVRVP----GA--PHQPGHCLQWACKACKRKASTVDRRRAA 72
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