1W9S,3C7E,1GMM


Conserved Protein Domain Family
CBD_IV

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smart00606: CBD_IV 
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Cellulose Binding Domain Type IV
Statistics
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PSSM-Id: 128869
View PSSM: smart00606
Aligned: 37 rows
Threshold Bit Score: 68.5137
Threshold Setting Gi: 21224735
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W9S_A          8 LKNPYERIQAEAYDamsgiqTEGTDDDGG----------------------GDNIGWINDGDWVKYERVHFERDAS-SIE 64
gi 75425996   357 KANPGDAIQAESWCqmsgvkTETTSDAGD----------------------GLNVGYIDGGDWMTYSV-NIPTTGTyKVS 413
gi 75469051    24 AQAETLELQAESFAnsggtySDGQPNPvtiyn----------------vngqGAINFVNAGDYVDYN-INAL-GGEyDIE 85
gi 81556473  1015 GYAVLQAEDPDRMEgps-lvKEAYYSDG-------------------------DLGGVTEGAWEQYTDLDFGGVAPrSVS 1068
gi 11526752   389 RWRPENHGDSD-YRksdasdVDIYKKATG----------------------N-IVGYNTTGDWLEYS-VDIAEAGDyTAT 443
gi 261416181  777 pleITDKIQAENYVamdgvqIE--EDSLG----------------------TPNIGWINDGDWTQY-YVNIPAAGSyVLT 831
gi 261416158  332 deDSENHGDSD-YRkdtgvdL---YKAGD----------------------GVALGYTQTGEWLEYT-VDVKADGEyNID 384
gi 261416183  413 GDDSENHGDSD-YRkd--tgVDLYKKATG-----------------------VIVGYNSEGDWLEWT-VNVKEAGDyTMF 465
gi 261416185  404 GDDSENHGDSD-YRkd--tgADLYKKATG-----------------------VALGYNTTGDWYEYT-INIAEAGDyTAI 456
gi 261416182  351 AITIPGTLEAENYDlggsrvSFYDKSSTNeggayrkdavdivvldsadlskGYALGYTQDGEWLEYT-VNVAKTAKfTVE 429
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1W9S_A         65 VRVASDTPGG----RIEIRTGSPt-GTLLGDVQV--P-NTG--G-WQQWQTV--TGNVQIQ---PGTYDVYLVFKGSPe- 127
gi 75425996   414 YRVAAQAGGG----QLQLEK-AGg-SPVYSNINV--P-ATG--G-WQNWQTI--SHNVVLP---AGEQLIALSAITGG-- 474
gi 75469051    86 YFVGTGVTSGp---NIEVLVDVNgtWQSQGSVAV--PyGS-----WDDFQSLtpSHTVTLP---VGTSTVRLLAVGSTw- 151
gi 81556473  1069 VRYANSQAAAaepsSVDIHAGDAd-GPVVATVSL--P-GTG--G-WQYYTTV--RAAVSDPqalLKASSATFVFHAPSgr 1139
gi 11526752   444 ASVAADGSGS-----FKLSID----GKSVGEFDV--T-WTG--SsWDNFIDV--KKKVTLP---AGKHTL-RMDVTAQy- 502
gi 261416181  832 GRVATGSEKE----SV-ITVTDSt-GKILGTLSVdpA-KSK--G-WNDWYES--STKITLP---AGKQKLTFTYTGEDty 896
gi 261416158  385 ASVAAGNSTS----AFKLYIDEKa-IT--DDVSV--P-QTAdnS-WDTYKTI--SVKEKVTl--KAGKHVLKLEITANy- 448
gi 261416183  466 AAVAAAGSTS----SFQLSLDGKa-LTEKITVPA--A-KEGeeN-YDDYNKV--KANVTLP---AG-KHVLRMDVTGAw- 529
gi 261416185  457 ASVATE-GTG----AFTLSLD----GKSLAEFEV--T-GT---S-YDDFSDV--KKKVTLP---AG-KHVLRLDVTQQy- 513
gi 261416182  430 VQMATASEKA----GVQLFIDN----KAVSDGII--A-KQGe-D-WSTYTAV--QSQLGEI---AAGEHVLKMQIVGNy- 490
                         170
                  ....*....|....
1W9S_A        128 ---YdlmNVNWFVF 138
gi 75425996   475 ---F---NINWLKV 482
gi 75469051   152 --qW---NLESFRL 160
gi 81556473  1140 qwvS---NFDWYQF 1150
gi 11526752   503 ---F---DIDYINF 510
gi 261416181  897 --lC---NVDWYNL 905
gi 261416158  449 ---V---NIDWIQF 456
gi 261416183  530 ---F---DVDYFTF 537
gi 261416185  514 ---F---DIDYINF 521
gi 261416182  491 ---V---NIDNIRF 498
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