2C35,3H0G,1Y14


Conserved Protein Domain Family
RPOL4c

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smart00657: RPOL4c 
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DNA-directed RNA-polymerase II subunit
Statistics
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PSSM-Id: 128904
View PSSM: smart00657
Aligned: 15 rows
Threshold Bit Score: 96.2671
Threshold Setting Gi: 61679565
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C35_A       34 KEFETA--ETLLNS---EVHMLLE-HRKQQNE--SAED-----EQELSEVFMKTLNYTARFS-RFKNRETIASVRSLLLQ 99
gi 82107430  31 PLFLDDvaNILFIK---VFQLLTD-LKQQRKE--SGKSkqssgQQNLNTIMYETLKYISKTPcRYQSPETVREFLIAMKG 104
gi 74873126  16 PDFKNC--KCLNLC---ELQLILG-DQLRLTSkrNEEA---------QALIKSSYDYANKFA-AIKNRSSIVDIRTNLER 79
gi 20532033   1 MEVKDA--NSALLSnyeVFQLLTD-LKEQRKE--SGKNkhssgQQNLNTITYETLKYISKTPcRHQSPEIVREFLTALKS 75
gi 20532032   1 MEVKDA--NAALLSnyeVFQLLTD-LKEQRKE--SGKNkhsagQQNLNAITYETLKYISKTPcRNQSPAIVQEFLTAMKS 75
gi 74961995 402 MEVLKTreTMLTNQ---EVLSFLNaLKKEEDNkqQHER-----CKQLSTVIYETKKYLNTSPaVTQNEAVICELIPKLAP 473
gi 75171569  30 SVKANA--GALTNF---EVLDFLN-SRGASKD--TTRV-----IAPIARSEYKVYDYLVETAaSTQTRESINKFADKCKD 96
gi 75272933  31 RMKANA--GALTNF---ELLDFLN-SRGASKD--TTRV-----IAPIARSEYKVYDYLVETAaSTQTRESVNKSADKCKD 97
gi 20532034   1 MEVKDA--NSALLSnyeVFQLLTD-LKDQRRE--SGKMkhsagQQNLNTITYETLKYLSKTPcRHQSPEIVREFLTAMKS 75
gi 7656977    1 MEVKDA--NSALLSnyeVFQLLTD-LKEQRKE--SGKNkhssgQQNLNTITYETLKYISKTPcRHQSPEIVREFLTALKS 75
                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
2C35_A      100 -KKLHKFELACLANLCPETAEESKALIPSLEGR-F-EDEELQQILDDIQTKRSFQ 151
gi 82107430 105 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIESLLQTVASILPGD 156
gi 74873126  80 iGDLHEYEIAMLVNLLPKTILEARYLIPSLI-R-L-NDETLNSILEHLISYKMYV 131
gi 20532033  76 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAE 127
gi 20532032  76 -HKLTKAEKLQLLNHRPMTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAG 127
gi 74961995 474 -FKLTGAETLQVINLRPSTTADIQLLIEETEER-FpSEEDLEKLVSTVSECLPPP 526
gi 75171569  97 -FKLAKAEILNIINLRPSSIVELLPIIENLDDReI-DTDGILELVKDLLPPLPTT 149
gi 75272933  98 -FKLAKAEILNIINLWPSSIVELLPIIENLDDReI-DTDGILELVKDLLPPLPTA 150
gi 20532034  76 -HKLTKAEKLQLLNHRPMTAVEIQLMVEETEERfT-EEEQIEALLHTVTHILPAE 128
gi 7656977   76 -HKLTKAEKLQLLNHRPVTAVEIQLMVEESEER-L-TEEQIEALLHTVTSILPAE 127
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