Conserved Protein Domain Family
Prim_Zn_Ribbon

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smart00778: Prim_Zn_Ribbon 
Zinc-binding domain of primase-helicase
This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Statistics
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PSSM-Id: 129016
View PSSM: smart00778
Aligned: 26 rows
Threshold Bit Score: 46.1714
Threshold Setting Gi: 37956818
Created: 12-Jul-2011
Updated: 16-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 56750813  35 TKESPCPCC---GGETRYR-FDDLDGNGTWFCSHCggrdqkgGGGTGF 78
gi 71908189  37 RRNLPCPLC---GGTDRFQ-YTDKFGEGNYHCRSC-------GPGGGF 73
gi 38637995  38 GRPGPCPMC---GGRDRFT-YTRKRNRGDWVCRKCndg--spAGGDGL 79
gi 91791026  29 GKNGPCPFCpdgGGKDRYR-WTQKKYGGVWVCSAC-------TEGkya 68
gi 29366716  11 IKHVPCENC---GSSDANSlFSD----GHMFCFACde----yVKGDGE 47
gi 26988994  15 VRHLPCENC---GSSDANSiYTD----NHQYCFACeh----yVHGDGE 51
gi 9634013   10 LYHIPCENC---GSSDANSlFSD----GHTYCYACen----wTPGDEQ 46
gi 37956818  12 LYHIPCDNC---GSSDGNSlFSD----GHTFCYVCek----wTAGNED 48
gi 77118185  13 LYHTQCPDC---GSSDANGvYSD----GHQFCFACdps-vawKKGDME 52
gi 17570806  10 LFHAPCENC---GSSDGNSvYSD----GHEWCFVCeh----rVPANEE 46
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