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Conserved domains on  [gi|6729999|pdb|1BX2|C]
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Chain C, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed With A Peptide From Human Myelin Basic Protein

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Myelin_MBP super family cl03301
Myelin basic protein;
1-15 2.86e-07

Myelin basic protein;


The actual alignment was detected with superfamily member pfam01669:

Pssm-ID: 307685  Cd Length: 147  Bit Score: 41.50  E-value: 2.86e-07
                          10
                  ....*....|....*
1BX2_C          1 ENPVVHFFKNIVTPR 15
Cdd:pfam01669  65 ENPVVHFFRNIVSPR 79
 
Name Accession Description Interval E-value
Myelin_MBP pfam01669
Myelin basic protein;
1-15 2.86e-07

Myelin basic protein;


Pssm-ID: 307685  Cd Length: 147  Bit Score: 41.50  E-value: 2.86e-07
                          10
                  ....*....|....*
1BX2_C          1 ENPVVHFFKNIVTPR 15
Cdd:pfam01669  65 ENPVVHFFRNIVSPR 79
 
Name Accession Description Interval E-value
Myelin_MBP pfam01669
Myelin basic protein;
1-15 2.86e-07

Myelin basic protein;


Pssm-ID: 307685  Cd Length: 147  Bit Score: 41.50  E-value: 2.86e-07
                          10
                  ....*....|....*
1BX2_C          1 ENPVVHFFKNIVTPR 15
Cdd:pfam01669  65 ENPVVHFFRNIVSPR 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.17
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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