NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|5542179|pdb|1CGQ|C]
View 

Chain C, PROTEIN (MACROPHAGE MIGRATION INHIBITORY FACTOR)

Protein Classification

MIF domain-containing protein( domain architecture ID 10471872)

MIF domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MIF pfam01187
Macrophage migration inhibitory factor (MIF);
3-115 2.88e-66

Macrophage migration inhibitory factor (MIF);


:

Pssm-ID: 395945  Cd Length: 114  Bit Score: 195.35  E-value: 2.88e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C          3 MFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCG 82
Cdd:pfam01187   2 MFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVGAEQNRSHSALLFK 81
                          90       100       110
                  ....*....|....*....|....*....|...
1CGQ_C         83 LLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
Cdd:pfam01187  82 FLTKELGLPKDRIYIRFFDLEAAQVGFNGTTFA 114
 
Name Accession Description Interval E-value
MIF pfam01187
Macrophage migration inhibitory factor (MIF);
3-115 2.88e-66

Macrophage migration inhibitory factor (MIF);


Pssm-ID: 395945  Cd Length: 114  Bit Score: 195.35  E-value: 2.88e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C          3 MFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCG 82
Cdd:pfam01187   2 MFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVGAEQNRSHSALLFK 81
                          90       100       110
                  ....*....|....*....|....*....|...
1CGQ_C         83 LLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
Cdd:pfam01187  82 FLTKELGLPKDRIYIRFFDLEAAQVGFNGTTFA 114
PTZ00397 PTZ00397
macrophage migration inhibition factor-like protein; Provisional
2-114 1.97e-22

macrophage migration inhibition factor-like protein; Provisional


Pssm-ID: 240401  Cd Length: 116  Bit Score: 84.49  E-value: 1.97e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C         2 AMFIVNTNVPRASVpDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLC 81
Cdd:PTZ00397   4 CQVSTNVNATDDQA-DAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAIT 82
                         90       100       110
                 ....*....|....*....|....*....|...
1CGQ_C        82 GLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
Cdd:PTZ00397  83 KILASHLKVKSERVYIEFKDCSAQNWAFNGSTF 115
 
Name Accession Description Interval E-value
MIF pfam01187
Macrophage migration inhibitory factor (MIF);
3-115 2.88e-66

Macrophage migration inhibitory factor (MIF);


Pssm-ID: 395945  Cd Length: 114  Bit Score: 195.35  E-value: 2.88e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C          3 MFIVNTNVPRASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCG 82
Cdd:pfam01187   2 MFTIDTNLPANSVPAGLEKRLTAALAKALGKPADRIAVHIRPGQAMVFGGSTDPCAVCSIKSIGVVGAEQNRSHSALLFK 81
                          90       100       110
                  ....*....|....*....|....*....|...
1CGQ_C         83 LLAERLRISPDRVYINYYDMNAANVGWNNSTFA 115
Cdd:pfam01187  82 FLTKELGLPKDRIYIRFFDLEAAQVGFNGTTFA 114
PTZ00397 PTZ00397
macrophage migration inhibition factor-like protein; Provisional
2-114 1.97e-22

macrophage migration inhibition factor-like protein; Provisional


Pssm-ID: 240401  Cd Length: 116  Bit Score: 84.49  E-value: 1.97e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C         2 AMFIVNTNVPRASVpDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLC 81
Cdd:PTZ00397   4 CQVSTNVNATDDQA-DAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAIT 82
                         90       100       110
                 ....*....|....*....|....*....|...
1CGQ_C        82 GLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
Cdd:PTZ00397  83 KILASHLKVKSERVYIEFKDCSAQNWAFNGSTF 115
PTZ00450 PTZ00450
macrophage migration inhibitory factor-like protein; Provisional
32-114 1.01e-05

macrophage migration inhibitory factor-like protein; Provisional


Pssm-ID: 185629  Cd Length: 113  Bit Score: 41.16  E-value: 1.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1CGQ_C        32 GKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYdmNAANVGWNN 111
Cdd:PTZ00450  33 GKPEDFVMTAFSDSTPMSFQGSTAPAAYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFYY--STKHCGWNG 110

                 ...
1CGQ_C       112 STF 114
Cdd:PTZ00450 111 TNF 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH