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Conserved domains on  [gi|7245558|pdb|1DLP|C]
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Chain C, Lectin Scafet Precursor

Protein Classification

B_lectin domain-containing protein( domain architecture ID 12189613)

B_lectin domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
B_lectin smart00108
Bulb-type mannose-specific lectin;
14-112 8.10e-24

Bulb-type mannose-specific lectin;


:

Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 91.99  E-value: 8.10e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C          14 PQTLHAAQSL-ELSSFRFTMQSDCNLVLFDSDVR--VWASNTAGA--TGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIG 88
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPvsDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*..
1DLP_C          89 NYVLVLQPDRTVTIYGPG---LWDSGT 112
Cdd:smart00108  87 NYVLVLLDDGNLVIYDSDgnfLWQSFD 113
B_lectin smart00108
Bulb-type mannose-specific lectin;
138-236 1.28e-18

Bulb-type mannose-specific lectin;


:

Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 78.12  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C         138 PQTLHATQSL-QLSPYRLSMETDCNLVLFDRDDR--VWSTNTAGKGTG-CRAVLQPNGRMDVLTNQNIAVWTSGNSRSAG 213
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPVSDsCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*.
1DLP_C         214 RYVFVLQPDRNLAIYG---GALWTTG 236
Cdd:smart00108  87 NYVLVLLDDGNLVIYDsdgNFLWQSF 112
 
Name Accession Description Interval E-value
B_lectin smart00108
Bulb-type mannose-specific lectin;
14-112 8.10e-24

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 91.99  E-value: 8.10e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C          14 PQTLHAAQSL-ELSSFRFTMQSDCNLVLFDSDVR--VWASNTAGA--TGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIG 88
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPvsDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*..
1DLP_C          89 NYVLVLQPDRTVTIYGPG---LWDSGT 112
Cdd:smart00108  87 NYVLVLLDDGNLVIYDSDgnfLWQSFD 113
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
15-112 1.15e-22

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 88.91  E-value: 1.15e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C       15 QTLHAAQSL-ELSSFRFTMQS-DCNLVLFDSDVR--VWASNTAG--ATGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIG 88
Cdd:cd00028   8 QTLVSSGSLfELGFFKLIMQSrDYNLILYKGSSRtvVWVANRDNpsGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNG 87
                        90       100
                ....*....|....*....|....*..
1DLP_C       89 NYVLVLQPDRTVTIYGPG---LWDSGT 112
Cdd:cd00028  88 NYVLVLLDDGNLVLYDSDgnfLWQSFD 114
B_lectin smart00108
Bulb-type mannose-specific lectin;
138-236 1.28e-18

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 78.12  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C         138 PQTLHATQSL-QLSPYRLSMETDCNLVLFDRDDR--VWSTNTAGKGTG-CRAVLQPNGRMDVLTNQNIAVWTSGNSRSAG 213
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPVSDsCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*.
1DLP_C         214 RYVFVLQPDRNLAIYG---GALWTTG 236
Cdd:smart00108  87 NYVLVLLDDGNLVIYDsdgNFLWQSF 112
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
139-236 5.20e-18

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 76.58  E-value: 5.20e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C      139 QTLHATQSL-QLSPYRLSM-ETDCNLVLFDRDDR--VWSTNTAGK-GTGCRAVLQPNGRMDVLTNQNIAVWTSGNSRSAG 213
Cdd:cd00028   8 QTLVSSGSLfELGFFKLIMqSRDYNLILYKGSSRtvVWVANRDNPsGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNG 87
                        90       100
                ....*....|....*....|....*.
1DLP_C      214 RYVFVLQPDRNLAIYG---GALWTTG 236
Cdd:cd00028  88 NYVLVLLDDGNLVLYDsdgNFLWQSF 113
 
Name Accession Description Interval E-value
B_lectin smart00108
Bulb-type mannose-specific lectin;
14-112 8.10e-24

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 91.99  E-value: 8.10e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C          14 PQTLHAAQSL-ELSSFRFTMQSDCNLVLFDSDVR--VWASNTAGA--TGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIG 88
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPvsDSCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*..
1DLP_C          89 NYVLVLQPDRTVTIYGPG---LWDSGT 112
Cdd:smart00108  87 NYVLVLLDDGNLVIYDSDgnfLWQSFD 113
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
15-112 1.15e-22

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 88.91  E-value: 1.15e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C       15 QTLHAAQSL-ELSSFRFTMQS-DCNLVLFDSDVR--VWASNTAG--ATGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIG 88
Cdd:cd00028   8 QTLVSSGSLfELGFFKLIMQSrDYNLILYKGSSRtvVWVANRDNpsGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNG 87
                        90       100
                ....*....|....*....|....*..
1DLP_C       89 NYVLVLQPDRTVTIYGPG---LWDSGT 112
Cdd:cd00028  88 NYVLVLLDDGNLVLYDSDgnfLWQSFD 114
B_lectin smart00108
Bulb-type mannose-specific lectin;
138-236 1.28e-18

Bulb-type mannose-specific lectin;


Pssm-ID: 214519 [Multi-domain]  Cd Length: 114  Bit Score: 78.12  E-value: 1.28e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C         138 PQTLHATQSL-QLSPYRLSMETDCNLVLFDRDDR--VWSTNTAGKGTG-CRAVLQPNGRMDVLTNQNIAVWTSGNSRSAG 213
Cdd:smart00108   7 GQTLVSGNSLfELGFFTLIMQNDYNLILYKSSSRtvVWVANRDNPVSDsCTLTLQSDGNLVLYDGDGRVVWSSNTTGANG 86
                           90       100
                   ....*....|....*....|....*.
1DLP_C         214 RYVFVLQPDRNLAIYG---GALWTTG 236
Cdd:smart00108  87 NYVLVLLDDGNLVIYDsdgNFLWQSF 112
B_lectin cd00028
Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat ...
139-236 5.20e-18

Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.


Pssm-ID: 237995  Cd Length: 116  Bit Score: 76.58  E-value: 5.20e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1DLP_C      139 QTLHATQSL-QLSPYRLSM-ETDCNLVLFDRDDR--VWSTNTAGK-GTGCRAVLQPNGRMDVLTNQNIAVWTSGNSRSAG 213
Cdd:cd00028   8 QTLVSSGSLfELGFFKLIMqSRDYNLILYKGSSRtvVWVANRDNPsGSSCTLTLQSDGNLVIYDGSGTVVWSSNTTRVNG 87
                        90       100
                ....*....|....*....|....*.
1DLP_C      214 RYVFVLQPDRNLAIYG---GALWTTG 236
Cdd:cd00028  88 NYVLVLLDDGNLVLYDsdgNFLWQSF 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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