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Conserved domains on  [gi|6730506|pdb|1QO0|E]
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Chain E, AMIR

Protein Classification

ANTAR domain-containing response regulator( domain architecture ID 11467116)

response regulator with a signal receiver (REC) domain and RNA binding antiterminator (ANTAR) domain involved in transcriptional antitermination, similar to Mycobacterium tuberculosis transcriptional regulatory protein pdtaR that is a member of the two-component regulatory system pdtaR/pdtaS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 11-190 4.22e-32

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


:

Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 114.28  E-value: 4.22e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       11 RELQVLVLNPPGEVSDALVLQLIRIGCSV-RQCWPPPEA----FDVPVDVVFTSI-FQNRHHDEIAALLAAGTPRTtLVA 84
Cdd:COG3707   2 RGLRVLVVDDEPLRRADLREGLREAGYEVvAEAADGEDAvelvRELKPDLVIVDIdMPDRDGLEAARQISEERPAP-VIL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLMQRHGWDE 164
Cdd:COG3707  81 LTAYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSE 160

                       170       180
                ....*....|....*....|....*.
1QO0_E      165 REAHQHLSREAMKRREPILKIAQELL 190
Cdd:COG3707 161 DEAYRLLRKQAMDRRVKLAEVAEAIL 186
 
Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 11-190 4.22e-32

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 114.28  E-value: 4.22e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       11 RELQVLVLNPPGEVSDALVLQLIRIGCSV-RQCWPPPEA----FDVPVDVVFTSI-FQNRHHDEIAALLAAGTPRTtLVA 84
Cdd:COG3707   2 RGLRVLVVDDEPLRRADLREGLREAGYEVvAEAADGEDAvelvRELKPDLVIVDIdMPDRDGLEAARQISEERPAP-VIL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLMQRHGWDE 164
Cdd:COG3707  81 LTAYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSE 160

                       170       180
                ....*....|....*....|....*.
1QO0_E      165 REAHQHLSREAMKRREPILKIAQELL 190
Cdd:COG3707 161 DEAYRLLRKQAMDRRVKLAEVAEAIL 186
ANTAR smart01012
ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found ...
 136-190 1.04e-11

ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins; The majority of the domain consists of a coiled-coil.


Pssm-ID: 198080 [Multi-domain]  Cd Length: 55  Bit Score: 57.49  E-value: 1.04e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
1QO0_E         136 TEQLQDRIAGQARINQAKVLLMQRHGWDEREAHQHLSREAMKRREPILKIAQELL 190
Cdd:smart01012   1 LEQLREALESRKVIEQAKGILMERRGLSEEEAFELLRKLAMDRNVKLRDVAEAIV 55
ANTAR pfam03861
ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding ...
 142-187 1.76e-09

ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


Pssm-ID: 427550 [Multi-domain]  Cd Length: 46  Bit Score: 51.18  E-value: 1.76e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
1QO0_E        142 RIAGQARINQAKVLLMQRHGWDEREAHQHLSREAMKRREPILKIAQ 187
Cdd:pfam03861   1 ALESRKVIEQAKGILMERLGLSEDEAFRLLRKLSMDRNVKLREVAE 46
 
Name Accession Description Interval E-value
AmiR COG3707
Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding ...
 11-190 4.22e-32

Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 442921 [Multi-domain]  Cd Length: 194  Bit Score: 114.28  E-value: 4.22e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       11 RELQVLVLNPPGEVSDALVLQLIRIGCSV-RQCWPPPEA----FDVPVDVVFTSI-FQNRHHDEIAALLAAGTPRTtLVA 84
Cdd:COG3707   2 RGLRVLVVDDEPLRRADLREGLREAGYEVvAEAADGEDAvelvRELKPDLVIVDIdMPDRDGLEAARQISEERPAP-VIL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1QO0_E       85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQDRIAGQARINQAKVLLMQRHGWDE 164
Cdd:COG3707  81 LTAYSDPELIERALEAGVSAYLVKPLDPEDLLPALELALARFRELRALRRELAKLREALEERKLIERAKGILMERRGLSE 160

                       170       180
                ....*....|....*....|....*.
1QO0_E      165 REAHQHLSREAMKRREPILKIAQELL 190
Cdd:COG3707 161 DEAYRLLRKQAMDRRVKLAEVAEAIL 186
ANTAR smart01012
ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found ...
 136-190 1.04e-11

ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins; The majority of the domain consists of a coiled-coil.


Pssm-ID: 198080 [Multi-domain]  Cd Length: 55  Bit Score: 57.49  E-value: 1.04e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
1QO0_E         136 TEQLQDRIAGQARINQAKVLLMQRHGWDEREAHQHLSREAMKRREPILKIAQELL 190
Cdd:smart01012   1 LEQLREALESRKVIEQAKGILMERRGLSEEEAFELLRKLAMDRNVKLRDVAEAIV 55
ANTAR pfam03861
ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding ...
 142-187 1.76e-09

ANTAR domain; ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.


Pssm-ID: 427550 [Multi-domain]  Cd Length: 46  Bit Score: 51.18  E-value: 1.76e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
1QO0_E        142 RIAGQARINQAKVLLMQRHGWDEREAHQHLSREAMKRREPILKIAQ 187
Cdd:pfam03861   1 ALESRKVIEQAKGILMERLGLSEDEAFRLLRKLSMDRNVKLREVAE 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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