Chain A, GA UNASSEMBLED COAT PROTEIN DIMER
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Levi_coat super family | cl28115 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
1-128 | 1.89e-81 | |||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. The actual alignment was detected with superfamily member PHA00026: Pssm-ID: 421570 Cd Length: 129 Bit Score: 234.94 E-value: 1.89e-81
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Name | Accession | Description | Interval | E-value | |||
cp | PHA00026 | coat protein |
1-128 | 1.89e-81 | |||
coat protein Pssm-ID: 133846 Cd Length: 129 Bit Score: 234.94 E-value: 1.89e-81
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Levi_coat | pfam01819 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
1-127 | 1.92e-39 | |||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. Pssm-ID: 396403 Cd Length: 132 Bit Score: 128.69 E-value: 1.92e-39
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Name | Accession | Description | Interval | E-value | |||
cp | PHA00026 | coat protein |
1-128 | 1.89e-81 | |||
coat protein Pssm-ID: 133846 Cd Length: 129 Bit Score: 234.94 E-value: 1.89e-81
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Levi_coat | pfam01819 | Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that ... |
1-127 | 1.92e-39 | |||
Levivirus coat protein; The Levivirus coat protein forms the bacteriophage coat that encapsidates the viral RNA. 180 copies of this protein form the virion shell. The MS2 bacteriophage coat protein controls two distinct processes: sequence-specific RNA encapsidation and repression of replicase translation-by binding to an RNA stem-loop structure of 19 nucleotides containing the initiation codon of the replicase gene. The binding of a coat protein dimer to this hairpin shuts off synthesis of the viral replicase, switching the viral replication cycle to virion assembly rather than continued replication. Pssm-ID: 396403 Cd Length: 132 Bit Score: 128.69 E-value: 1.92e-39
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Blast search parameters | ||||
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