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Conserved domains on  [gi|7245649|pdb|2BVW|A]
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Chain A, CELLOBIOHYDROLASE II

Protein Classification

glycoside hydrolase family 6 protein( domain architecture ID 10474417)

glycoside hydrolase family 6 protein similar to Humicola insolens endoglucanase-6B that cuts internal beta-1,4-glucosidic bonds, and to Podospora anserina exoglucanase CEL6B that cuts the non-reducing end beta-1,4-glucosidic linkages in cellulose and cellotetraose to release cellobiose

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
43-326 1.52e-160

Glycosyl hydrolases family 6;


:

Pssm-ID: 426212  Cd Length: 293  Bit Score: 451.30  E-value: 1.52e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A         43 EVPSFQWLDRNVTVDTLlVQTLSEIREANQAGanpQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREI 122
Cdd:pfam01341  13 DVPTFVWLDTIAAIPGL-EDALADARAAAKAG---GRTPVLVVYNLPDRDCAALASNGELSSADAGLARYKEYIDPIAAI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        123 LISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDL-PHVAMYMDAGHAGWLGWPANIQPAAELFA 201
Cdd:pfam01341  89 IGDYSDLRAVVVIEPDSLANLVTNLSVPKCANAASAYEEGIAYALKQLNApPNVYVYLDAGHAGWLGWDANLGPAAELLA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        202 KIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQ-FIVDQGRSGKQPTgQKEW 280
Cdd:pfam01341 169 KVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHiFIIDTSRNGNQGT-RPEW 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
2BVW_A        281 GHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAAR 326
Cdd:pfam01341 248 GDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
 
Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
43-326 1.52e-160

Glycosyl hydrolases family 6;


Pssm-ID: 426212  Cd Length: 293  Bit Score: 451.30  E-value: 1.52e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A         43 EVPSFQWLDRNVTVDTLlVQTLSEIREANQAGanpQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREI 122
Cdd:pfam01341  13 DVPTFVWLDTIAAIPGL-EDALADARAAAKAG---GRTPVLVVYNLPDRDCAALASNGELSSADAGLARYKEYIDPIAAI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        123 LISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDL-PHVAMYMDAGHAGWLGWPANIQPAAELFA 201
Cdd:pfam01341  89 IGDYSDLRAVVVIEPDSLANLVTNLSVPKCANAASAYEEGIAYALKQLNApPNVYVYLDAGHAGWLGWDANLGPAAELLA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        202 KIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQ-FIVDQGRSGKQPTgQKEW 280
Cdd:pfam01341 169 KVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHiFIIDTSRNGNQGT-RPEW 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
2BVW_A        281 GHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAAR 326
Cdd:pfam01341 248 GDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
CelA1 COG5297
Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism];
4-360 3.13e-43

Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism];


Pssm-ID: 227616 [Multi-domain]  Cd Length: 544  Bit Score: 157.13  E-value: 3.13e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        4 NPFEGVQLWANNYYRSEVHTlAIPQITDPALRAAASAVAEVPSFQWLD-----RNVTVDTLLVQTLSEIREA-NQAGANP 77
Cdd:COG5297  24 NPFVGATPYTNPDYAKCRDR-SIAKVELRSLKAKMMSSKIYPTAVWLDpilavAGGAKNGGRLDLVRHLDAAlAQKKDNA 102
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A       78 QYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYK-AYINRIREILIS--FSDVRTILVIEPDSLANMVTNMNVPKCSG 154
Cdd:COG5297 103 PITAGFVIYDIPGRDCHALASNGELPLTEEGLQRYKrEYIDTIASIFNNpkYKDIRIVNAIEPDTLPNTVTNYSGAACAA 182
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      155 AAST--YRELTIYALKQL-DLPHVAMYMDAGHAGWLGWPANIQPAAELFAK--IYEDAGKPrAVRGLATNVAN------Y 223
Cdd:COG5297 183 AKMTgiYEYGIKYALNKSsAIPNVYTYMDIGHSGWLGWDDNRASALGLYTAtiQVTTAGFA-SVNGFATDTANrtplveP 261
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      224 NAWSVSSPP---PYTSP-----NPNYDEKHYIEAFRPLLEARGFPAQ--FIVDQGRSG----KQPTG------------- 276
Cdd:COG5297 262 NLPNPDRNPggqPIRSAkfyewNRYFEEMDARENLYGDFVAAGWPSNigFYIDTGRNGwggaIRPTTngghdvndyvnsg 341
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      277 ----QKEWGHWCNAIGTGFGMRPTANTGhQYVDAFVWVKPGGECDGTS---DTTAAR-YDYHCG---------LEDALKP 339
Cdd:COG5297 342 rgdrRDHRGNWCNQSGAGLGLPPTATPG-GHADAFLWIKPPGESDGSSgliPNQQGKgFDQYCDplfhtadgvLTGALPD 420
                       410       420
                ....*....|....*....|.
2BVW_A      340 APEAGQWFNEYFIQLLRNANP 360
Cdd:COG5297 421 APLSGDWFHAQFVKLINNAYP 441
 
Name Accession Description Interval E-value
Glyco_hydro_6 pfam01341
Glycosyl hydrolases family 6;
43-326 1.52e-160

Glycosyl hydrolases family 6;


Pssm-ID: 426212  Cd Length: 293  Bit Score: 451.30  E-value: 1.52e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A         43 EVPSFQWLDRNVTVDTLlVQTLSEIREANQAGanpQYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYKAYINRIREI 122
Cdd:pfam01341  13 DVPTFVWLDTIAAIPGL-EDALADARAAAKAG---GRTPVLVVYNLPDRDCAALASNGELSSADAGLARYKEYIDPIAAI 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        123 LISFSDVRTILVIEPDSLANMVTNMNVPKCSGAASTYRELTIYALKQLDL-PHVAMYMDAGHAGWLGWPANIQPAAELFA 201
Cdd:pfam01341  89 IGDYSDLRAVVVIEPDSLANLVTNLSVPKCANAASAYEEGIAYALKQLNApPNVYVYLDAGHAGWLGWDANLGPAAELLA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        202 KIYEDAGKPRAVRGLATNVANYNAWSVSSPPPYTSPNPNYDEKHYIEAFRPLLEARGFPAQ-FIVDQGRSGKQPTgQKEW 280
Cdd:pfam01341 169 KVYKAAGGPASVRGFATNVSNYNPTDEPTSPSYTQWNPNFDEKHYGEALSPLLVAAGFPAHiFIIDTSRNGNQGT-RPEW 247
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
2BVW_A        281 GHWCNAIGTGFGMRPTANTGHQYVDAFVWVKPGGECDGTSDTTAAR 326
Cdd:pfam01341 248 GDWCNPPGAGFGVRPTTNTGDPLVDAFVWVKPPGESDGTSDSSAPR 293
CelA1 COG5297
Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism];
4-360 3.13e-43

Cellulase/cellobiase CelA1 [Carbohydrate transport and metabolism];


Pssm-ID: 227616 [Multi-domain]  Cd Length: 544  Bit Score: 157.13  E-value: 3.13e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A        4 NPFEGVQLWANNYYRSEVHTlAIPQITDPALRAAASAVAEVPSFQWLD-----RNVTVDTLLVQTLSEIREA-NQAGANP 77
Cdd:COG5297  24 NPFVGATPYTNPDYAKCRDR-SIAKVELRSLKAKMMSSKIYPTAVWLDpilavAGGAKNGGRLDLVRHLDAAlAQKKDNA 102
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A       78 QYAAQIVVYDLPDRDCAAAASNGEWAIANNGVNNYK-AYINRIREILIS--FSDVRTILVIEPDSLANMVTNMNVPKCSG 154
Cdd:COG5297 103 PITAGFVIYDIPGRDCHALASNGELPLTEEGLQRYKrEYIDTIASIFNNpkYKDIRIVNAIEPDTLPNTVTNYSGAACAA 182
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      155 AAST--YRELTIYALKQL-DLPHVAMYMDAGHAGWLGWPANIQPAAELFAK--IYEDAGKPrAVRGLATNVAN------Y 223
Cdd:COG5297 183 AKMTgiYEYGIKYALNKSsAIPNVYTYMDIGHSGWLGWDDNRASALGLYTAtiQVTTAGFA-SVNGFATDTANrtplveP 261
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      224 NAWSVSSPP---PYTSP-----NPNYDEKHYIEAFRPLLEARGFPAQ--FIVDQGRSG----KQPTG------------- 276
Cdd:COG5297 262 NLPNPDRNPggqPIRSAkfyewNRYFEEMDARENLYGDFVAAGWPSNigFYIDTGRNGwggaIRPTTngghdvndyvnsg 341
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2BVW_A      277 ----QKEWGHWCNAIGTGFGMRPTANTGhQYVDAFVWVKPGGECDGTS---DTTAAR-YDYHCG---------LEDALKP 339
Cdd:COG5297 342 rgdrRDHRGNWCNQSGAGLGLPPTATPG-GHADAFLWIKPPGESDGSSgliPNQQGKgFDQYCDplfhtadgvLTGALPD 420
                       410       420
                ....*....|....*....|.
2BVW_A      340 APEAGQWFNEYFIQLLRNANP 360
Cdd:COG5297 421 APLSGDWFHAQFVKLINNAYP 441
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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