|
Name |
Accession |
Description |
Interval |
E-value |
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
1-265 |
0e+00 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 621.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
Cdd:PRK11608 1 MAEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160
Cdd:PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 161 FRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIAELKNVVERSVYRH 240
Cdd:PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240
|
250 260
....*....|....*....|....*
2C9C_A 241 GTSDYPLDDIIIDPFKRRPPEDAIA 265
Cdd:PRK11608 241 GTSEYPLDNIIIDPFKRRPAEEAIA 265
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
8-265 |
0e+00 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 544.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIAELKNVVERSVYRHGTSDYPL 247
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260
....*....|....*....|
2C9C_A 248 DDIIIDPFKR--RPPEDAIA 265
Cdd:TIGR02974 241 DEIIIDPFASpwRPKQAAPA 260
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
6-237 |
9.70e-108 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 318.64 E-value: 9.70e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
2C9C_A 165 LLDRLAfdVV--QLPPLRERESDIMLMAEYFAIQMCREIKLPlFPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG3829 298 LYYRLN--VIpiHIPPLRERKEDIPLLAEHFLEKFNKKYGKN-IKGISPEALELLLAYDWPGNVRELENVIERAV 369
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
8-176 |
1.43e-94 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 275.05 E-value: 1.43e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*....
2C9C_A 168 RLAfdVVQL 176
Cdd:pfam00158 161 RLN--VIPI 167
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
5-237 |
3.48e-77 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 242.86 E-value: 3.48e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 5 KDNLLGEANSFLEVLEQVSHLAPLDK-PVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENLLDSELFGH 80
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVALRSRaPILLTGPTGAGKSFLARRIYELKKRrhqVSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160
Cdd:NF038308 258 VKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 161 FRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREikLPLFPGFTERARE------TLLNYRWPGNIAELKNVVE 234
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARE--LGRQVRFNKEARFrylafaTSPEALWPGNFRELSASVT 415
|
...
2C9C_A 235 RSV 237
Cdd:NF038308 416 RMA 418
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
17-178 |
2.33e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 2.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 17 EVLEQVSHLAPLD--KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGaftgaqKRHPG 94
Cdd:cd00009 5 EAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV------RLLFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 95 RFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGsqplqVNVRLVCATNADLPamvneGTFRADLLDRLaFDVV 174
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRL-DIRI 147
|
....
2C9C_A 175 QLPP 178
Cdd:cd00009 148 VIPL 151
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-180 |
2.40e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.46 E-value: 2.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS---ELFGHEAGAFTGAQKRHpGRFERA---DGGT 103
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDV 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
2C9C_A 104 LFLDELATAPMMVQEKLLRVIeygELERVGGSQPLQVNVRLVCATNadlpamvNEGTFRADLLDRLAFDVVQLPPLR 180
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
1-265 |
0e+00 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 621.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 1 MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
Cdd:PRK11608 1 MAEYKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160
Cdd:PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 161 FRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIAELKNVVERSVYRH 240
Cdd:PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240
|
250 260
....*....|....*....|....*
2C9C_A 241 GTSDYPLDDIIIDPFKRRPPEDAIA 265
Cdd:PRK11608 241 GTSEYPLDNIIIDPFKRRPAEEAIA 265
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
8-265 |
0e+00 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 544.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:TIGR02974 81 AQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIAELKNVVERSVYRHGTSDYPL 247
Cdd:TIGR02974 161 RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEEAPI 240
|
250 260
....*....|....*....|
2C9C_A 248 DDIIIDPFKR--RPPEDAIA 265
Cdd:TIGR02974 241 DEIIIDPFASpwRPKQAAPA 260
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
6-237 |
9.70e-108 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 318.64 E-value: 9.70e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
Cdd:COG3829 138 DDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGAF 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164
Cdd:COG3829 218 TGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRED 297
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
2C9C_A 165 LLDRLAfdVV--QLPPLRERESDIMLMAEYFAIQMCREIKLPlFPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG3829 298 LYYRLN--VIpiHIPPLRERKEDIPLLAEHFLEKFNKKYGKN-IKGISPEALELLLAYDWPGNVRELENVIERAV 369
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
2-237 |
3.00e-104 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 308.82 E-value: 3.00e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 2 AEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81
Cdd:COG2204 127 NAEDSGLIGRSPAMQEVRRLIEKVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHE 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 82 AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTF 161
Cdd:COG2204 207 KGAFTGAVARRIGKFELADGGTLFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRF 286
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
2C9C_A 162 RADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPlfPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG2204 287 REDLYYRLNVFPIELPPLRERREDIPLLARHFLARFAAELGKP--VKLSPEALEALLAYDWPGNVRELENVIERAV 360
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
8-176 |
1.43e-94 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 275.05 E-value: 1.43e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*....
2C9C_A 168 RLAfdVVQL 176
Cdd:pfam00158 161 RLN--VIPI 167
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
6-236 |
1.14e-91 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 280.45 E-value: 1.14e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
Cdd:TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAF 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165
Cdd:TIGR01817 276 TGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
2C9C_A 166 LDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLfpGFTERARETLLNYRWPGNIAELKNVVERS 236
Cdd:TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL--TITPSAIRVLMSCKWPGNVRELENCLERT 424
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
6-237 |
2.33e-84 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 264.07 E-value: 2.33e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
Cdd:COG3284 321 AALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIPEELIESELFGYEPGAF 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164
Cdd:COG3284 401 TGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAATHRDLRELVAAGRFRED 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
2C9C_A 165 LLDRLAFDVVQLPPLREREsDIMLMAEYFAIQMCREIKlplFPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG3284 481 LYYRLNGLTLTLPPLRERE-DLPALIEHLLRELAAGRG---PLRLSPEALALLAAYPWPGNVRELRNVLRTAL 549
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
8-239 |
5.46e-84 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 259.72 E-value: 5.46e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTG 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:PRK05022 269 AISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH 348
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQmCReIKLPLFP-GFTERARETLLNYRWPGNIAELKNVVERSVYR 239
Cdd:PRK05022 349 RLSVFPLSVPPLRERGDDVLLLAGYFLEQ-NR-ARLGLRSlRLSPAAQAALLAYDWPGNVRELEHVISRAALL 419
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
6-237 |
4.83e-82 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 255.11 E-value: 4.83e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAF 85
Cdd:COG3283 204 DHIVASSPKMRQVIRQAKKMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYAPGAF 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKRHPGRFERADGGTLFLDELA-TAPMMvQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRAD 164
Cdd:COG3283 284 GNAREGKKGLFEQANGGTVFLDEIGeMSPQL-QAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEFRED 362
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
2C9C_A 165 LLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLfPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG3283 363 LYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPR-PRLSPDLVDFLQSYPWPGNVRQLENALYRAV 434
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
16-237 |
7.47e-82 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 252.85 E-value: 7.47e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR 95
Cdd:PRK11361 153 MDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 96 FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQ 175
Cdd:PRK11361 233 FERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLI 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
2C9C_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLFpGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:PRK11361 313 LPPLRDRREDISLLANHFLQKFSSENQRDII-DIDPMAMSLLTAWSWPGNIRELSNVIERAV 373
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
8-237 |
1.91e-79 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 246.48 E-value: 1.91e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:PRK10365 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:PRK10365 221 ADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFaIQMCREIKLPLFPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHF-LQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
8-235 |
9.09e-78 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 242.72 E-value: 9.09e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLfPGFTERARETLLNYRWPGNIAELKNVVER 235
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEP-KLLDPEALERLKQLRWPGNVRQLENLCRW 362
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
8-237 |
1.59e-77 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 241.58 E-value: 1.59e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:TIGR02915 141 LITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTG 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:TIGR02915 221 AVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFpGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:TIGR02915 301 RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTK-GFTDDALRALEAHAWPGNVRELENKVKRAV 369
|
|
| RNA_repair_RtcR |
NF038308 |
RNA repair transcriptional activator RtcR; |
5-237 |
3.48e-77 |
|
RNA repair transcriptional activator RtcR;
Pssm-ID: 468466 [Multi-domain] Cd Length: 527 Bit Score: 242.86 E-value: 3.48e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 5 KDNLLGEANSFLEVLEQVSHLAPLDK-PVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENLLDSELFGH 80
Cdd:NF038308 178 KSGIATRNAAFNRLIEQIERVALRSRaPILLTGPTGAGKSFLARRIYELKKRrhqVSGPFVEVNCATLRGDLAMSELFGH 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160
Cdd:NF038308 258 VKGAFTGAQADRAGLLRAADGGTLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGR 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 161 FRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREikLPLFPGFTERARE------TLLNYRWPGNIAELKNVVE 234
Cdd:NF038308 338 FREDLYARINLWTFRLPGLRERREDIEPNLDYELDRFARE--LGRQVRFNKEARFrylafaTSPEALWPGNFRELSASVT 415
|
...
2C9C_A 235 RSV 237
Cdd:NF038308 416 RMA 418
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
6-235 |
5.90e-76 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 240.01 E-value: 5.90e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLH--------YLSSRWQGPFISLNCAALNENLLDSEL 77
Cdd:PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHreyfarhdARQGKKSHPFVAVNCGAIAESLLEAEL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 78 FGHEAGAFTGAQKR-HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156
Cdd:PRK15424 299 FGYEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDV 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 157 NEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER---ARETLLNYRWPGNIAELKNVV 233
Cdd:PRK15424 379 RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGlqqCETLLLHYDWPGNVRELRNLM 458
|
..
2C9C_A 234 ER 235
Cdd:PRK15424 459 ER 460
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
8-237 |
1.66e-67 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 221.24 E-value: 1.66e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 8 LLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTG 87
Cdd:PRK15429 378 IIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTG 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 88 AQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167
Cdd:PRK15429 458 ASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY 537
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
2C9C_A 168 RLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPL--FPGFTERareTLLNYRWPGNIAELKNVVERSV 237
Cdd:PRK15429 538 RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIdsIPAETLR---TLSNMEWPGNVRELENVIERAV 606
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
7-232 |
1.14e-66 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 213.96 E-value: 1.14e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFT 86
Cdd:PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 87 GAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLL 166
Cdd:PRK10923 219 GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
2C9C_A 167 DRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP---LFPGfTERAretLLNYRWPGNIAELKNV 232
Cdd:PRK10923 299 HRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEaklLHPE-TEAA---LTRLAWPGNVRQLENT 363
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
17-236 |
5.46e-63 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 205.69 E-value: 5.46e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 17 EVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRF 96
Cdd:PRK10820 215 QVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFF 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 97 ERADGGTLFLDELA-TAPMMvQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQ 175
Cdd:PRK10820 295 EQANGGSVLLDEIGeMSPRM-QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLN 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
2C9C_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLfPGFTERARETLLNYRWPGNIAELKNVVERS 236
Cdd:PRK10820 374 LPPLRDRPQDIMPLTELFVARFADEQGVPR-PKLAADLNTVLTRYGWPGNVRQLKNAIYRA 433
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
16-237 |
6.02e-60 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 196.21 E-value: 6.02e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR 95
Cdd:PRK15115 144 LRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 96 FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQ 175
Cdd:PRK15115 224 FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLK 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
2C9C_A 176 LPPLRERESDIMLMAEYFAIQMCREIKlPLFPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:PRK15115 304 IPALAERTEDIPLLANHLLRQAAERHK-PFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCV 364
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
16-237 |
6.31e-55 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 180.04 E-value: 6.31e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 16 LEVLEQVSHLAPldkpVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSelfgheagaftgaqkrhpgr 95
Cdd:COG3604 106 LRLLETLASLAA----VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 96 feradggtlfldelatapmmvqekllrvIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQ 175
Cdd:COG3604 162 ----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIR 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
2C9C_A 176 LPPLRERESDIMLMAEYFAIQMCREIKLPLfPGFTERARETLLNYRWPGNIAELKNVVERSV 237
Cdd:COG3604 214 LPPLRERREDIPLLAEHFLEKFSRRLGKPI-LRLSPEALEALMAYPWPGNVRELENVIERAV 274
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
6-263 |
9.73e-47 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 164.85 E-value: 9.73e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGheaGAF 85
Cdd:PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SDR 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 86 TGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165
Cdd:PRK11388 402 TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQL 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 166 LDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPgfTERARETLLNYRWPGNIAELKNVVERSVYRHGTSDY 245
Cdd:PRK11388 482 YYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKI--DDDALARLVSYRWPGNDFELRSVIENLALSSDNGRI 559
|
250
....*....|....*...
2C9C_A 246 PLDDIIIDPFKRRPPEDA 263
Cdd:PRK11388 560 RLSDLPEHLFTEQATDDV 577
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
31-233 |
2.21e-33 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 128.30 E-value: 2.21e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 31 PVLIIGERGTGKELIASRLH-YlsSRWQG------PFISLNCA--ALNENLLDSELFGHEAGAFTGAQKRHPGRFERADG 101
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYeY--AIEIGvlpedaPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADG 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 102 GTLFLDElatapmmV-------QEKLLRVIEYGELERVGGS-QPLQVNVRLVCATNADLpamvnEGTFRADLLDRLAFdV 173
Cdd:COG1221 210 GILFLDE-------VhrlppegQEMLFTFMDKGIYRRLGETeKTRKANVRIIFATTEDP-----ESSLLKTFLRRIPM-V 276
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
2C9C_A 174 VQLPPLRER--ESDIMLMaEYFAIQMCREIKLPLFpgFTERARETLLNYRWPGNIAELKNVV 233
Cdd:COG1221 277 IKLPSLEERslEERLELI-KHFFKEEAKRLNKPIK--VSKEVLKALLLYDCPGNIGQLKSDI 335
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
31-235 |
6.18e-32 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 123.02 E-value: 6.18e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 31 PVLIIGERGTGKELIASRLHYLS-SRWQ--GPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD 107
Cdd:COG4650 210 PILLTGPTGAGKSQLARRIYELKkARHQvsGRFVEVNCATLRGDGAMSALFGHVKGAFTGAVSDRAGLLRSADGGVLFLD 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 108 ELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIM 187
Cdd:COG4650 290 EIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINLWTFRLPGLAERREDIE 369
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
2C9C_A 188 LMAEY----FAIQMCREIKlplfpgFTERARETLLNY------RWPGNIAELKNVVER 235
Cdd:COG4650 370 PNLDYelarFAREQGRRVR------FNKEARARYLAFatspeaLWSGNFRDLNASVTR 421
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
17-178 |
2.33e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 2.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 17 EVLEQVSHLAPLD--KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGaftgaqKRHPG 94
Cdd:cd00009 5 EAIEALREALELPppKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLV------RLLFE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 95 RFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGsqplqVNVRLVCATNADLPamvneGTFRADLLDRLaFDVV 174
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-----ENVRVIGATNRPLL-----GDLDRALYDRL-DIRI 147
|
....
2C9C_A 175 QLPP 178
Cdd:cd00009 148 VIPL 151
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
9-179 |
1.04e-18 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 80.08 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLdselfgheagaftga 88
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELL--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 89 qkrhpgrfERADGGTLFLDELATAPMMVQEKLLRVIEYGElervggsqplQVNVRLVCATNADLPAMVNEGTFRADLLDR 168
Cdd:pfam14532 66 --------EQAKGGTLYLKDIADLSKALQKGLLLLLAKAE----------GYRVRLVCTSSKDLPQLAAAGLFDEQLYFE 127
|
170
....*....|.
2C9C_A 169 LAFDVVQLPPL 179
Cdd:pfam14532 128 LSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
30-180 |
2.40e-11 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 60.46 E-value: 2.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS---ELFGHEAGAFTGAQKRHpGRFERA---DGGT 103
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLR-LALALArklKPDV 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
2C9C_A 104 LFLDELATAPMMVQEKLLRVIeygELERVGGSQPLQVNVRLVCATNadlpamvNEGTFRADLLDRLAFDVVQLPPLR 180
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLL---EELRLLLLLKSEKNLTVILTTN-------DEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
31-169 |
1.41e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 49.21 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 31 PVLIIGERGTGKELIASRLHYLSSRWqgpfiSLNCAALNENLLDSELFGHEAGAfTGAQKRHPGRFERA--DGGTLFLDE 108
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNR-----PVFYVQLTRDTTEEDLFGRRNID-PGGASWVDGPLVRAarEGEIAVLDE 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
2C9C_A 109 LATAPMMVQEKLLRVIEYGELERVGGSQPLQV---NVRLVCATNaDLPAMVNEGTfrADLLDRL 169
Cdd:pfam07728 75 INRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMN-PLDRGLNELS--PALRSRF 135
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
32-179 |
3.11e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 39.88 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 32 VLIIGERGTGKELIAsrlHYLSSRWQGPFISLNCAAL-NENLLDSElfGHEAGAFTGAQKRHPgrferadgGTLFLDEL- 109
Cdd:pfam00004 1 LLLYGPPGTGKTTLA---KAVAKELGAPFIEISGSELvSKYVGESE--KRLRELFEAAKKLAP--------CVIFIDEId 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2C9C_A 110 ----------ATAPMMVQEKLLRVIEygelervgGSQPLQVNVRLVCATNadlpamvNEGTFRADLLDRlaFDVVQLPPL 179
Cdd:pfam00004 68 alagsrgsggDSESRRVVNQLLTELD--------GFTSSNSKVIVIAATN-------RPDKLDPALLGR--FDRIIEFPL 130
|
|
| |
