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Conserved domains on  [gi|7245651|pdb|2UAG|A]
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Chain A, PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)

Protein Classification

UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase( domain architecture ID 11433699)

UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)

EC:  6.3.2.-
Gene Symbol:  murD
Gene Ontology:  GO:0008764|GO:0005524

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
2-436 0e+00

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


:

Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 558.54  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLPEA-VERHTGSLNDEWLMAADLIVASPGIALAHP 79
Cdd:COG0771   1 DLKGKKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPELAAaELEAPgVEVVLGEHPEELLDGADLVVKSPGIPPDHP 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       80 SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDEC--ELYVLE 157
Cdd:COG0771  81 LLKAARAAGIPVIGEIELAYRLSPAPIIAITGTNGKTTTTTLIGHILKAAGLRVAVGGNIGTPLLDLLLEPEppDVYVLE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      158 LSSFQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALTMPI-RGADERCVSFGVN 233
Cdd:COG0771 161 LSSFQLETTPSLRPDVAVILNITPDHLDRHG-SMEAYAAAKARIFANQTpddYAVLNADDPLTRALaEEAKARVVPFSLK 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      234 M---GDYHLnhQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 310
Cdd:COG0771 240 EpleGGAGL--EDGKLVDRASGEELLPVDDLRLPGRHNLENALAALAAARALGVPPEAIREALRSFKGLPHRLEFVAEIN 317
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      311 GVRWINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA---EQT 387
Cdd:COG0771 318 GVRFINDSKATNPDATLAALESF--DGPVVLIAGGLDKGADFSPLAPAVAERVKAVVLIGEDAEKIAAALAGAGvpvVIV 395
                       410       420       430       440
                ....*....|....*....|....*....|....*....|....*....
2UAG_A      388 ETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436
Cdd:COG0771 396 ETMEEAVAAAAELARPGDVVLLSPACASFDQFKNYEERGDVFKEAVREL 444
 
Name Accession Description Interval E-value
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
2-436 0e+00

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 558.54  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLPEA-VERHTGSLNDEWLMAADLIVASPGIALAHP 79
Cdd:COG0771   1 DLKGKKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPELAAaELEAPgVEVVLGEHPEELLDGADLVVKSPGIPPDHP 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       80 SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDEC--ELYVLE 157
Cdd:COG0771  81 LLKAARAAGIPVIGEIELAYRLSPAPIIAITGTNGKTTTTTLIGHILKAAGLRVAVGGNIGTPLLDLLLEPEppDVYVLE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      158 LSSFQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALTMPI-RGADERCVSFGVN 233
Cdd:COG0771 161 LSSFQLETTPSLRPDVAVILNITPDHLDRHG-SMEAYAAAKARIFANQTpddYAVLNADDPLTRALaEEAKARVVPFSLK 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      234 M---GDYHLnhQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 310
Cdd:COG0771 240 EpleGGAGL--EDGKLVDRASGEELLPVDDLRLPGRHNLENALAALAAARALGVPPEAIREALRSFKGLPHRLEFVAEIN 317
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      311 GVRWINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA---EQT 387
Cdd:COG0771 318 GVRFINDSKATNPDATLAALESF--DGPVVLIAGGLDKGADFSPLAPAVAERVKAVVLIGEDAEKIAAALAGAGvpvVIV 395
                       410       420       430       440
                ....*....|....*....|....*....|....*....|....*....
2UAG_A      388 ETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436
Cdd:COG0771 396 ETMEEAVAAAAELARPGDVVLLSPACASFDQFKNYEERGDVFKEAVREL 444
murD TIGR01087
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation ...
7-434 7.51e-150

UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273436 [Multi-domain]  Cd Length: 433  Bit Score: 432.53  E-value: 7.51e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A          7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP-----PGLDKLPEAVERHTGsLNDEWLMAADLIVASPGIALAHPSL 81
Cdd:TIGR01087   1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEelepsMGQLRLNEGSVLHTG-LHLEDLNNADLVVKSPGIPPDHPLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE-CELYVLELSS 160
Cdd:TIGR01087  80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPALEVLDQEgAELYVLELSS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        161 FQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENA---KVCVVNADD-ALTMPIRGADERCVSFGVNmgd 236
Cdd:TIGR01087 160 FQLETTESLRPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQtegDVAVLNADDpRFARLAQKSKAQVIWFSVE--- 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        237 yhlnhQQGETWLRVKGEKVL---NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVR 313
Cdd:TIGR01087 236 -----KDAERGLCIRDGGLYlkpNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVH 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        314 WINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQT---ETM 390
Cdd:TIGR01087 311 FYNDSKATNVHATLAALSAF--DNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPLLKEAGLSVylvESL 388
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
2UAG_A        391 EQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAK 434
Cdd:TIGR01087 389 EEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR 432
murD PRK14106
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
2-436 9.58e-101

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional


Pssm-ID: 184511 [Multi-domain]  Cd Length: 450  Bit Score: 307.67  E-value: 9.58e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEA-VERHTGSLNDEWLMAADLIVASPGIALA 77
Cdd:PRK14106   2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQlkeALEELGELgIELVLGEYPEEFLEGVDLVVVSPGVPLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        78 HPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPalmlLDDECELY--- 154
Cdd:PRK14106  82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP----LIDAVEEYged 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       155 ---VLELSSFQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALTMP-IRGADERC 227
Cdd:PRK14106 158 diiVAEVSSFQLETIKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRpsdYTVLNYDDPRTRSlAKKAKARV 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       228 VSF--------GVNMgdyhlnhQQGETWLRVKG--EKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT 297
Cdd:PRK14106 237 IFFsrkslleeGVFV-------KNGKIVISLGGkeEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFK 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       298 GLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLA 377
Cdd:PRK14106 310 GVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAY--ETPIVLIAGGYDKGSDFDEFAKAFKEKVKKLILLGETAQEIA 387
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
2UAG_A       378 -ALRP---EVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436
Cdd:PRK14106 388 eAARKygfDNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELVLEL 450
Mur_ligase_M pfam08245
Mur ligase middle domain;
109-271 2.44e-21

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 91.21  E-value: 2.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        109 ITGSNGKSTVTTLVGEMAKAAGVNVGVGGN------------IGLPALM--LLDDECELYVLELSSFQLE---TTSSLQA 171
Cdd:pfam08245   1 VTGTNGKTTTTELIAAILSLAGGVIGTIGTyigksgnttnnaIGLPLTLaeMVEAGAEYAVLEVSSHGLGegrLSGLLKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        172 VAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAKVC---VVNADDALTMPIR----GADERCVSFGVN------MGDYH 238
Cdd:pfam08245  81 DIAVFTNISPDHLDFHG-TMENYAKAKAELFEGLPEDgiaVINADDPYGAFLIaklkKAGVRVITYGIEgeadlrAANIE 159
                         170       180       190
                  ....*....|....*....|....*....|...
2UAG_A        239 LNHQQGETWLRVKGEKVLNVkEMKLSGQHNYTN 271
Cdd:pfam08245 160 LSSDGTSFDLFTVPGGELEI-EIPLLGRHNVYN 191
 
Name Accession Description Interval E-value
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
2-436 0e+00

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 558.54  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLPEA-VERHTGSLNDEWLMAADLIVASPGIALAHP 79
Cdd:COG0771   1 DLKGKKVLVLGLGKSGLAAARLLAKLGAEVTVSDDRPAPELAAaELEAPgVEVVLGEHPEELLDGADLVVKSPGIPPDHP 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       80 SLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDEC--ELYVLE 157
Cdd:COG0771  81 LLKAARAAGIPVIGEIELAYRLSPAPIIAITGTNGKTTTTTLIGHILKAAGLRVAVGGNIGTPLLDLLLEPEppDVYVLE 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      158 LSSFQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALTMPI-RGADERCVSFGVN 233
Cdd:COG0771 161 LSSFQLETTPSLRPDVAVILNITPDHLDRHG-SMEAYAAAKARIFANQTpddYAVLNADDPLTRALaEEAKARVVPFSLK 239
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      234 M---GDYHLnhQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHN 310
Cdd:COG0771 240 EpleGGAGL--EDGKLVDRASGEELLPVDDLRLPGRHNLENALAALAAARALGVPPEAIREALRSFKGLPHRLEFVAEIN 317
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      311 GVRWINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVA---EQT 387
Cdd:COG0771 318 GVRFINDSKATNPDATLAALESF--DGPVVLIAGGLDKGADFSPLAPAVAERVKAVVLIGEDAEKIAAALAGAGvpvVIV 395
                       410       420       430       440
                ....*....|....*....|....*....|....*....|....*....
2UAG_A      388 ETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436
Cdd:COG0771 396 ETMEEAVAAAAELARPGDVVLLSPACASFDQFKNYEERGDVFKEAVREL 444
murD TIGR01087
UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation ...
7-434 7.51e-150

UDP-N-acetylmuramoylalanine--D-glutamate ligase; [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273436 [Multi-domain]  Cd Length: 433  Bit Score: 432.53  E-value: 7.51e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A          7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP-----PGLDKLPEAVERHTGsLNDEWLMAADLIVASPGIALAHPSL 81
Cdd:TIGR01087   1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEelepsMGQLRLNEGSVLHTG-LHLEDLNNADLVVKSPGIPPDHPLV 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         82 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE-CELYVLELSS 160
Cdd:TIGR01087  80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTPALEVLDQEgAELYVLELSS 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        161 FQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENA---KVCVVNADD-ALTMPIRGADERCVSFGVNmgd 236
Cdd:TIGR01087 160 FQLETTESLRPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQtegDVAVLNADDpRFARLAQKSKAQVIWFSVE--- 235
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        237 yhlnhQQGETWLRVKGEKVL---NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVR 313
Cdd:TIGR01087 236 -----KDAERGLCIRDGGLYlkpNDLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVH 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        314 WINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQT---ETM 390
Cdd:TIGR01087 311 FYNDSKATNVHATLAALSAF--DNPVILIVGGDDKGADFSPLAPAAAGKVKAVLAIGEDAAKIAPLLKEAGLSVylvESL 388
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
2UAG_A        391 EQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAK 434
Cdd:TIGR01087 389 EEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELVR 432
murD PRK14106
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
2-436 9.58e-101

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional


Pssm-ID: 184511 [Multi-domain]  Cd Length: 450  Bit Score: 307.67  E-value: 9.58e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP---GLDKLPEA-VERHTGSLNDEWLMAADLIVASPGIALA 77
Cdd:PRK14106   2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQlkeALEELGELgIELVLGEYPEEFLEGVDLVVVSPGVPLD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        78 HPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPalmlLDDECELY--- 154
Cdd:PRK14106  82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP----LIDAVEEYged 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       155 ---VLELSSFQLETTSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALTMP-IRGADERC 227
Cdd:PRK14106 158 diiVAEVSSFQLETIKEFKPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRpsdYTVLNYDDPRTRSlAKKAKARV 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       228 VSF--------GVNMgdyhlnhQQGETWLRVKG--EKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT 297
Cdd:PRK14106 237 IFFsrkslleeGVFV-------KNGKIVISLGGkeEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFK 309
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       298 GLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLhvDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLA 377
Cdd:PRK14106 310 GVEHRIEFVAEINGVKFINDSKGTNPDAAIKALEAY--ETPIVLIAGGYDKGSDFDEFAKAFKEKVKKLILLGETAQEIA 387
                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
2UAG_A       378 -ALRP---EVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436
Cdd:PRK14106 388 eAARKygfDNILFAETLEEAVKKAYEIAKPGDVVLLSPACASWDMFKNFEERGRLFKELVLEL 450
Mur_ligase_M pfam08245
Mur ligase middle domain;
109-271 2.44e-21

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 91.21  E-value: 2.44e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        109 ITGSNGKSTVTTLVGEMAKAAGVNVGVGGN------------IGLPALM--LLDDECELYVLELSSFQLE---TTSSLQA 171
Cdd:pfam08245   1 VTGTNGKTTTTELIAAILSLAGGVIGTIGTyigksgnttnnaIGLPLTLaeMVEAGAEYAVLEVSSHGLGegrLSGLLKP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        172 VAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAKVC---VVNADDALTMPIR----GADERCVSFGVN------MGDYH 238
Cdd:pfam08245  81 DIAVFTNISPDHLDFHG-TMENYAKAKAELFEGLPEDgiaVINADDPYGAFLIaklkKAGVRVITYGIEgeadlrAANIE 159
                         170       180       190
                  ....*....|....*....|....*....|...
2UAG_A        239 LNHQQGETWLRVKGEKVLNVkEMKLSGQHNYTN 271
Cdd:pfam08245 160 LSSDGTSFDLFTVPGGELEI-EIPLLGRHNVYN 191
MurF COG0770
UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
100-436 3.00e-19

UDP-N-acetylmuramyl pentapeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl pentapeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440533 [Multi-domain]  Cd Length: 451  Bit Score: 89.39  E-value: 3.00e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      100 REAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPaLMLL--DDECELYVLEL--SSF-QLETTSSL- 169
Cdd:COG0770  96 ARFNIPVIAITGSNGKTTTKEMLAAVLSTKGKVLATPGNfnneIGVP-LTLLrlPEDHEFAVLEMgmNHPgEIAYLARIa 174
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      170 QAVAATILNVTEDHMDRypFG-LQQYRAA*LRIYENAK---VCVVNADDALTMPIRG-ADERCVSFGVNMG------DYH 238
Cdd:COG0770 175 RPDIAVITNIGPAHLEG--FGsLEGIARAKGEIFEGLPpggVAVLNADDPLLAALAErAKARVLTFGLSEDadvraeDIE 252
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      239 LNHQQGETWLRVKGEKVlNVKeMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDS 318
Cdd:COG0770 253 LDEDGTRFTLHTPGGEL-EVT-LPLPGRHNVSNALAAAAVALALGLDLEEIAAGLAAFQPVKGRLEVIEGAGGVTLIDDS 330
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      319 -KAtNVGSTEAA---LNGLHVDGTLHLLLGGDGKSADFSP-----LARYLNGDNV-RLYCFGRDGAQLA-ALRPEVAEQT 387
Cdd:COG0770 331 yNA-NPDSMKAAldvLAQLPGGGRRIAVLGDMLELGEESEelhreVGELAAELGIdRLFTVGELARAIAeAAGGERAEHF 409
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*....
2UAG_A      388 ETMEQAMRLLAPRVQPGDMVLLspaCASldqfknfeqRGNEFARLAKEL 436
Cdd:COG0770 410 EDKEELLAALKALLRPGDVVLV---KGS---------RGMGLERVVEAL 446
murC TIGR01082
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial ...
65-317 7.79e-19

UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273433 [Multi-domain]  Cd Length: 448  Bit Score: 88.13  E-value: 7.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         65 ADLIVASPGIALAHPSLSAAADAGIEIV--GDI--ELFCREaqaPIVAITGSNGKSTVTTLVGEMAKAAGVN--VGVGGN 138
Cdd:TIGR01082  59 ADVVVVSAAIKDDNPEIVEAKERGIPVIrrAEMlaELMRFR---HSIAVAGTHGKTTTTAMIAVILKEAGLDptVVVGGL 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        139 IGLpalmlLDDEC-----ELYVLEL----SSFqlettSSLQAVAATILNVTEDHMDRYPFGLQQYRAA*LRIYENAK--- 206
Cdd:TIGR01082 136 VKE-----AGTNArlgsgEYLVAEAdesdASF-----LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPfyg 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        207 VCVVNADDALTMPI-RGADERCVSFGVNMGDYHL---NHQQ----GETWLRVKGEKVLNVKeMKLSGQHNYTNALAALAL 278
Cdd:TIGR01082 206 LAVICADDPVLRELvPKATEQVITYGGSGEDADYraeNIQQsgaeGKFSVRGKGKLYLEFT-LNLPGRHNVLNALAAIAV 284
                         250       260       270
                  ....*....|....*....|....*....|....*....
2UAG_A        279 ADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWIND 317
Cdd:TIGR01082 285 ALELGIDFEAILRALANFQGVKRRFEILGEFGGVLLIDD 323
murF TIGR01143
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the ...
99-409 1.75e-18

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273468 [Multi-domain]  Cd Length: 417  Bit Score: 86.94  E-value: 1.75e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A         99 CREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLP-ALMLLDDECELYVLELS-SFQLE---TTSSL 169
Cdd:TIGR01143  69 RAKFSGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNfnneIGLPlTLLRAPGDHDYAVLEMGaSHPGEiayLAEIA 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        170 QAVAATILNVTEDHMDRypFGLQQYRA-A*LRIYENAKVC---VVNADDALTMPIRG--ADERCVSFGVNMGDYHLN--- 240
Cdd:TIGR01143 149 KPDIAVITNIGPAHLEG--FGSLEGIAeAKGEILQGLKENgiaVINADDPAFADLAKrlPNRNILSFGFEGGDFVAKdis 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        241 -HQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEvVLEHNGVRWINDSK 319
Cdd:TIGR01143 227 ySALGSTSFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFE-VQTKNGLTLIDDTY 305
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        320 ATNVGSTEAALNGL-HVDGTLHLLLGGDGKSADFSP-----LARYLNGDNVRLYCF-GRDGAQLAALRPEVAEQTETMEQ 392
Cdd:TIGR01143 306 NANPDSMRAALDALaRFPGKKILVLGDMAELGEYSEelhaeVGRYANSLGIDLVFLvGEEAAVIYDSFGKQGKHFADKDE 385
                         330
                  ....*....|....*..
2UAG_A        393 AMRLLAPRVQPGDMVLL 409
Cdd:TIGR01143 386 LLAFLKTLVRKGDVVLV 402
MurC COG0773
UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall ...
60-317 7.49e-15

UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440536 [Multi-domain]  Cd Length: 451  Bit Score: 76.26  E-value: 7.49e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       60 EWLMAADLIVASPGIALAHPSLSAAADAGIEIV------GDIelfCREAQApiVAITGSNGKSTVTTLVGEMAKAAGVNV 133
Cdd:COG0773  59 ENIDDADLVVVSSAIPRDNPELVAARERGIPVLsraemlAEL---MRGKRS--IAVAGTHGKTTTTSMLAHILEEAGLDP 133
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      134 G--VGG---NIGLPALMlldDECELYVLE----LSSFQLettssLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYEN 204
Cdd:COG0773 134 TflIGGilnNFGTNARL---GDGDYFVAEadesDGSFLH-----YSPDIAVVTNIEADHLDIYG-DLEAIKEAFHEFARN 204
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      205 AK---VCVVNADDALTMPI-RGADERCVSFGVNM-GDYHL-NHQQGETW----LRVKGEKVLNVkEMKLSGQHNYTNALA 274
Cdd:COG0773 205 VPfygLLVLCADDPGLRELlPRCGRPVITYGFSEdADYRAeNIRIDGGGstfdVLRRGEELGEV-ELNLPGRHNVLNALA 283
                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
2UAG_A      275 ALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWIND 317
Cdd:COG0773 284 AIAVALELGVDPEAIAEALASFKGVKRRFELKGEVGGVTVIDD 326
MurE COG0769
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
106-347 1.08e-13

UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440532 [Multi-domain]  Cd Length: 459  Bit Score: 72.42  E-value: 1.08e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIG-------------------LPALM--LLDDECELYVLELSSFQLE 164
Cdd:COG0769  82 LIGVTGTNGKTTTTYLLAQILRALGKKTGLIGTVGngiggelipsslttpealdLQRLLaeMVDAGVTHVVMEVSSHALD 161
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      165 T--TSSLQAVAATILNVTEDHMDrYPFGLQQYRAA*LRIYEN---AKVCVVNADDALTMPI-RGADERCVSFGV-NMGDY 237
Cdd:COG0769 162 QgrVDGVRFDVAVFTNLTRDHLD-YHGTMEAYFAAKARLFDQlgpGGAAVINADDPYGRRLaAAAPARVITYGLkADADL 240
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A      238 H---LNHQQGETWLRVK---GEKVLNVKemkLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNG 311
Cdd:COG0769 241 RatdIELSADGTRFTLVtpgGEVEVRLP---LIGRFNVYNALAAIAAALALGIDLEEILAALEKLKGVPGRMERVDGGQG 317
                       250       260       270
                ....*....|....*....|....*....|....*...
2UAG_A      312 VRWINDSkATNVGSTEAALNGL--HVDGTLHLLLGGDG 347
Cdd:COG0769 318 PTVIVDY-AHTPDALENVLEALrpHTKGRLIVVFGCGG 354
Mur_ligase_C pfam02875
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ...
300-369 3.36e-10

Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460731 [Multi-domain]  Cd Length: 87  Bit Score: 56.20  E-value: 3.36e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
2UAG_A        300 PHRFEVVLEHNGVRWINDsKATNVGSTEAALNGL--HVDGTLHLLLGGDG-KSADFSPLARYLNGDNVRLYCF 369
Cdd:pfam02875   2 PGRLEVVGENNGVLVIDD-YAHNPDAMEAALRALrnLFPGRLILVFGGMGdRDAEFHALLGRLAAALADVVIL 73
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
100-408 1.66e-09

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 60.10  E-value: 1.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       100 REAQA-PIVAITGSNGKSTVTTLVGEMAKAAGVNVGV---GGN----IGLP-ALMLLDDECELYVLEL---SSFQLETTS 167
Cdd:PRK11929 598 RARFSlPVVAITGSNGKTTTKEMIAAILAAWQGEDRVlatEGNfnneIGVPlTLLRLRAQHRAAVFELgmnHPGEIAYLA 677
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       168 SL-QAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENAK---VCVVNADDALT-MPIRGADERCV-SFGVNMG------ 235
Cdd:PRK11929 678 AIaAPTVALVTNAQREHQEFMH-SVEAVARAKGEIIAALPedgVAVVNGDDPYTaIWAKLAGARRVlRFGLQPGadvyae 756
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       236 ----DYHLNHQQGETWLRVKGEKVLNVkEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNG 311
Cdd:PRK11929 757 kiakDISVGEAGGTRCQVVTPAGSAEV-YLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLSCG 835
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       312 VRWINDSKATNVGSTEAALNGL-HVDGTLHLLLGGD-GKSADFSPLA-----RYLNGDNVR-LYCFGRDGAQLAALRPEV 383
Cdd:PRK11929 836 TRIIDDTYNANPDSMRAAIDVLaELPNGPRALVLGDmLELGDNGPAMhrevgKYARQLGIDaLITLGEAARDAAAAFGAG 915
                        330       340
                 ....*....|....*....|....*.
2UAG_A       384 AE-QTETMEQAMRLLAPRVQPGDMVL 408
Cdd:PRK11929 916 ARgVCASVDEIIAALRGALPEGDSVL 941
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
106-306 2.23e-09

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 59.72  E-value: 2.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIG-------------------LPALM--LLDDECELYVLELSSFQLE 164
Cdd:PRK11929 114 LVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGarldgrlipgslttpdaiiLHRILarMRAAGADAVAMEASSHGLE 193
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       165 TT--SSLQAVAATILNVTEDHMDrYPFGLQQYRAA*LRIYENAK---VCVVNADDA----LTMPIRGADERCVSFGVNMG 235
Cdd:PRK11929 194 QGrlDGLRIAVAGFTNLTRDHLD-YHGTMQDYEEAKAALFSKLPglgAAVINADDPaaarLLAALPRGLKVGYSPQNAGA 272
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
2UAG_A       236 DYHLNH-QQGETWLRVK---GEKVLNVKeMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVV 306
Cdd:PRK11929 273 DVQARDlRATAHGQVFTlatPDGSYQLV-TRLLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRMERV 346
murE TIGR01085
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ...
106-306 6.55e-09

UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273435 [Multi-domain]  Cd Length: 464  Bit Score: 57.71  E-value: 6.55e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL----------------PALMLL--------DDECELYVLELSSF 161
Cdd:TIGR01085  87 VIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYrlggndliknpaalttPEALTLqstlaemvEAGAQYAVMEVSSH 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        162 QLEtTSSLQAV---AATILNVTEDHMDrYPFGLQQYRAA*LRIYEN---AKVCVVNADDALTMPIRG--ADERCVSFGVN 233
Cdd:TIGR01085 167 ALA-QGRVRGVrfdAAVFTNLSRDHLD-FHGTMENYFAAKASLFTElglKRFAVINLDDEYGAQFVKrlPKDITVSAITQ 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        234 MGDY-HLNHQQGETWLRVKGEKvLNVK--------EMKLSGQHNYTNALAA-LALADAAGLPRASSLKALTTFTGLPHRF 303
Cdd:TIGR01085 245 PADGrAQDIKITDSGYSFEGQQ-FTFEtpageghlHTPLIGRFNVYNLLAAlATLLHLGGIDLEDIVAALEKFRGVPGRM 323

                  ...
2UAG_A        304 EVV 306
Cdd:TIGR01085 324 ELV 326
murE PRK00139
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
106-311 2.98e-08

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional


Pssm-ID: 234660 [Multi-domain]  Cd Length: 460  Bit Score: 55.52  E-value: 2.98e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       106 IVAITGSNGKSTVTTLVGEMAKAAG--------VNVGVGGN-----------IGLPALM--LLDDECELYVLELSSFQLE 164
Cdd:PRK00139  97 LIGVTGTNGKTTTAYLLAQILRLLGektaligtLGNGIGGElipsglttpdaLDLQRLLaeLVDAGVTYAAMEVSSHALD 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A       165 T--TSSLQAVAATILNVTEDHMDRYPfGLQQYRAA*LRIYENA-KVCVVNADDALTMPIRgADERCVSFGVNMGDYHLNH 241
Cdd:PRK00139 177 QgrVDGLKFDVAVFTNLSRDHLDYHG-TMEDYLAAKARLFSELgLAAVINADDEVGRRLL-ALPDAYAVSMAGADLRATD 254
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
2UAG_A       242 QQgetwLRVKGEKVLNVKEMKLS--GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNG 311
Cdd:PRK00139 255 VE----YTDSGQTFTLVTEVESPliGRFNVSNLLAALAALLALGVPLEDALAALAKLQGVPGRMERVDAGQG 322
PRK14016 PRK14016
cyanophycin synthetase; Provisional
70-135 4.29e-06

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 49.00  E-value: 4.29e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2UAG_A        70 ASPGIaLAH--PSLSAAADAGIEIVGdiELFCREAQA--PIVAITGSNGKSTVTTLVGEMAKAAGVNVGV 135
Cdd:PRK14016 445 AAPGL-RMHlaPSEGKPRNVGEAIVD--MLFPEGDDGriPIVAVTGTNGKTTTTRLIAHILKLSGKRVGM 511
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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