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Conserved domains on  [gi|270346720|pdb|3KDE|C]
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Chain C, Transposable element P transposase

Protein Classification

DM3 domain-containing protein( domain architecture ID 10653492)

DM3 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DM3 smart00692
Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;
16-74 3.21e-12

Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;


:

Pssm-ID: 128933  Cd Length: 59  Bit Score: 55.39  E-value: 3.21e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
3KDE_C         16 LIHVPKCAIKRKLWEQSLGCSLGE----NSQICDTHFNDSQWkaapakgqtFKRRRLNADAVP 74
Cdd:smart00692  1 LFRFPKDPELLKKWEHNLRLSPDEkklkNSRICSRHFEPECF---------GKRRRLKPGAVP 54
 
Name Accession Description Interval E-value
DM3 smart00692
Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;
16-74 3.21e-12

Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;


Pssm-ID: 128933  Cd Length: 59  Bit Score: 55.39  E-value: 3.21e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
3KDE_C         16 LIHVPKCAIKRKLWEQSLGCSLGE----NSQICDTHFNDSQWkaapakgqtFKRRRLNADAVP 74
Cdd:smart00692  1 LFRFPKDPELLKKWEHNLRLSPDEkklkNSRICSRHFEPECF---------GKRRRLKPGAVP 54
 
Name Accession Description Interval E-value
DM3 smart00692
Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;
16-74 3.21e-12

Zinc finger domain in CG10631, C. elegans LIN-15B and human P52rIPK;


Pssm-ID: 128933  Cd Length: 59  Bit Score: 55.39  E-value: 3.21e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
3KDE_C         16 LIHVPKCAIKRKLWEQSLGCSLGE----NSQICDTHFNDSQWkaapakgqtFKRRRLNADAVP 74
Cdd:smart00692  1 LFRFPKDPELLKKWEHNLRLSPDEkklkNSRICSRHFEPECF---------GKRRRLKPGAVP 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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