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Conserved domains on  [gi|1351638095|pdb|5MSZ|A]
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Chain A, Thermobia domestica domestica AA15

Protein Classification

lytic polysaccharide monooxygenase( domain architecture ID 10503569)

lytic polysaccharide monooxygenase (LPMO) plays a pivotal role in the breakdown of polysaccharides such as cellulose and chitin

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LPMO_10 pfam03067
Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with ...
1-190 5.34e-21

Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.


:

Pssm-ID: 427120  Cd Length: 184  Bit Score: 85.51  E-value: 5.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A          1 HGHLSVPPMRSSMWR--DGYNVPPNYND--DGLNCGSFDVQW----------------VKNGGKCGeCGDD--YSLPRPR 58
Cdd:pfam03067   1 HGYVTSPPSRQYLCRegPEGGEAPNNPAcrAAVAAGGTQAQYewnsvegpkggrhqagIPDGGLCS-AGDPnfSGLDLPR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A         59 PNESGgmygkniivANYQQGSTISVDLHIQAPH-IGFFEFRLCarndpnvletQDCFDQ-HLLELADGSGTRFTMEEH-- 134
Cdd:pfam03067  80 TDWPK---------TTYTAGQTITFTWTLTAPHkTGYFEFYIT----------KPGWDPtKPLTWSDLELGPFATVTDpg 140
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A        135 ----VAGEYTVDLKLPQGVTCTNCVLQWfWrtgnRYGDCGdgtsgmgcgpqEEYRNCADI 190
Cdd:pfam03067 141 qqppAGGAYYITVTLPSGRSGRHVILQV-W----QRSDTG-----------EAFYNCSDV 184
 
Name Accession Description Interval E-value
LPMO_10 pfam03067
Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with ...
1-190 5.34e-21

Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.


Pssm-ID: 427120  Cd Length: 184  Bit Score: 85.51  E-value: 5.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A          1 HGHLSVPPMRSSMWR--DGYNVPPNYND--DGLNCGSFDVQW----------------VKNGGKCGeCGDD--YSLPRPR 58
Cdd:pfam03067   1 HGYVTSPPSRQYLCRegPEGGEAPNNPAcrAAVAAGGTQAQYewnsvegpkggrhqagIPDGGLCS-AGDPnfSGLDLPR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A         59 PNESGgmygkniivANYQQGSTISVDLHIQAPH-IGFFEFRLCarndpnvletQDCFDQ-HLLELADGSGTRFTMEEH-- 134
Cdd:pfam03067  80 TDWPK---------TTYTAGQTITFTWTLTAPHkTGYFEFYIT----------KPGWDPtKPLTWSDLELGPFATVTDpg 140
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A        135 ----VAGEYTVDLKLPQGVTCTNCVLQWfWrtgnRYGDCGdgtsgmgcgpqEEYRNCADI 190
Cdd:pfam03067 141 qqppAGGAYYITVTLPSGRSGRHVILQV-W----QRSDTG-----------EAFYNCSDV 184
 
Name Accession Description Interval E-value
LPMO_10 pfam03067
Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with ...
1-190 5.34e-21

Lytic polysaccharide mono-oxygenase, cellulose-degrading; This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.


Pssm-ID: 427120  Cd Length: 184  Bit Score: 85.51  E-value: 5.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A          1 HGHLSVPPMRSSMWR--DGYNVPPNYND--DGLNCGSFDVQW----------------VKNGGKCGeCGDD--YSLPRPR 58
Cdd:pfam03067   1 HGYVTSPPSRQYLCRegPEGGEAPNNPAcrAAVAAGGTQAQYewnsvegpkggrhqagIPDGGLCS-AGDPnfSGLDLPR 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A         59 PNESGgmygkniivANYQQGSTISVDLHIQAPH-IGFFEFRLCarndpnvletQDCFDQ-HLLELADGSGTRFTMEEH-- 134
Cdd:pfam03067  80 TDWPK---------TTYTAGQTITFTWTLTAPHkTGYFEFYIT----------KPGWDPtKPLTWSDLELGPFATVTDpg 140
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
5MSZ_A        135 ----VAGEYTVDLKLPQGVTCTNCVLQWfWrtgnRYGDCGdgtsgmgcgpqEEYRNCADI 190
Cdd:pfam03067 141 qqppAGGAYYITVTLPSGRSGRHVILQV-W----QRSDTG-----------EAFYNCSDV 184
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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