|
Name |
Accession |
Description |
Interval |
E-value |
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
40-779 |
0e+00 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 765.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 40 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRReAVCIV--LSDDTCSDEKIRMNRVVRNNLRVRLGDVI 115
Cdd:TIGR01243 3 ELRVAEAYPRDvgRGIVRIDRQTAARLGVEPGDFVEIEKGDRS-VVAIVwpLRPDDEGRGIIRMDGYLRANAGVTIGDTV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 116 SIQPCpDVKYGKRIHVLPiddTVEGITGNLFEVYLKPYFLEayRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT 195
Cdd:TIGR01243 82 TVERA-EVKEAKKVVLAP---TQPIRFGRDFVDYVKEFLLG--KPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEAT 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 196 VIHCEGEPIkREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVAN 275
Cdd:TIGR01243 156 EVEIREKPV-REEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 276 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 355
Cdd:TIGR01243 235 EAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 356 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 435
Cdd:TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAM 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 436 QAIRKKMDL--IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVE 513
Cdd:TIGR01243 395 AALRRFIREgkINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLK 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 514 HPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDE 593
Cdd:TIGR01243 475 HPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDE 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 594 LDSIAKARggNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 673
Cdd:TIGR01243 555 IDAIAPAR--GARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 674 ANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRrererqtnpSAMEVEEDDPVPE--IRRDHF 751
Cdd:TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK---------EKLEVGEEEFLKDlkVEMRHF 703
|
730 740
....*....|....*....|....*...
7RLC_A 752 EEAMRFARRSVSDNDIRKYEMFAQTLQQ 779
Cdd:TIGR01243 704 LEALKKVKPSVSKEDMLRYERLAKELKR 731
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
236-775 |
0e+00 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 223540 [Multi-domain] Cd Length: 494 Bit Score: 547.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 236 ELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANEtGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 315
Cdd:COG0464 1 ELPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 316 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKqRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 395
Cdd:COG0464 80 IFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 396 LQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEdetidaevmnsLAVTMDDFRWALSQSN 475
Cdd:COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEY-----------IGVTEDDFEEALKKVL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 476 PSalRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 555
Cdd:COG0464 228 PS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 556 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARggnIGDGGGAADRVINQILTEMDGMSTKKNVFII 635
Cdd:COG0464 306 SVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR---GPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 636 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRAckla 713
Cdd:COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKkpPLAEDVDLEELAEITEGYSGADIAALVREA---- 458
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
7RLC_A 714 iresieseirrererqtnpsAMEVEEDDPVPEIRRDHFEEAMRFARRSVSdndirkYEMFAQ 775
Cdd:COG0464 459 --------------------ALEALREARRREVTLDDFLDALKKIKPSVT------YEEWKE 494
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
209-449 |
7.56e-96 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 224143 [Multi-domain] Cd Length: 406 Bit Score: 304.96 E-value: 7.56e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 209 EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 288
Cdd:COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 289 IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRP 365
Cdd:COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRfdSGTSGDREvQRTMLELLNQLDGFDPRGNVKVIMATNRP 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 366 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 445
Cdd:COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380
|
....
7RLC_A 446 DLED 449
Cdd:COG1222 381 TMED 384
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
215-449 |
1.09e-94 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 301.37 E-value: 1.09e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 215 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 294
Cdd:PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 295 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 371
Cdd:PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRtdSGTSGDREvQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPA 286
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
7RLC_A 372 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 449
Cdd:PRK03992 287 ILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMED 364
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
483-709 |
4.17e-88 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 284.03 E-value: 4.17e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 483 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 563 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARggniGDGGGAADRVIN----QILTEMDGMSTKKNVFIIGAT 638
Cdd:PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKR----TDSGTSGDREVQrtlmQLLAEMDGFDPRGNVKIIAAT 277
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
7RLC_A 639 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 709
Cdd:PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEA 348
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
476-709 |
4.88e-88 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 224143 [Multi-domain] Cd Length: 406 Bit Score: 284.54 E-value: 4.88e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 476 PSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 555
Cdd:COG1222 135 PRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFI 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 556 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 635
Cdd:COG1222 215 RVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
7RLC_A 636 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 709
Cdd:COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEA 368
|
|
| 26Sp45 |
TIGR01242 |
26S proteasome subunit P45 family; Many proteins may score above the trusted cutoff because an ... |
196-449 |
1.75e-85 |
|
26S proteasome subunit P45 family; Many proteins may score above the trusted cutoff because an internal
Pssm-ID: 130309 [Multi-domain] Cd Length: 364 Bit Score: 276.29 E-value: 1.75e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 196 VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVAN 275
Cdd:TIGR01242 99 VLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 276 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQ 352
Cdd:TIGR01242 179 ETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRtdSGTSGDREvQRTLMQLLAELDGFDP 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 353 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 432
Cdd:TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTE 338
|
250
....*....|....*..
7RLC_A 433 AALQAIRKKMDLIDLED 449
Cdd:TIGR01242 339 AGMFAIREERDYVTMDD 355
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
204-478 |
3.05e-85 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 223540 [Multi-domain] Cd Length: 494 Bit Score: 280.17 E-value: 3.05e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 204 IKREDEEESLNE-------------VGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIA 270
Cdd:COG0464 214 VTEDDFEEALKKvlpsrgvlfededVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 271 RAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 350
Cdd:COG0464 294 KAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGI 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 351 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAA 428
Cdd:COG0464 374 EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKppLAEDVDLEELAEITEGYSGADIAA 453
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
7RLC_A 429 LCSEAALQAIRkkmdlidledETIDAEvmnslaVTMDDFRWALSQSNPSA 478
Cdd:COG0464 454 LVREAALEALR----------EARRRE------VTLDDFLDALKKIKPSV 487
|
|
| 26Sp45 |
TIGR01242 |
26S proteasome subunit P45 family; Many proteins may score above the trusted cutoff because an ... |
472-709 |
1.65e-80 |
|
26S proteasome subunit P45 family; Many proteins may score above the trusted cutoff because an internal
Pssm-ID: 130309 [Multi-domain] Cd Length: 364 Bit Score: 263.20 E-value: 1.65e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 472 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 551
Cdd:TIGR01242 102 TSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 552 ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 631
Cdd:TIGR01242 182 ATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
7RLC_A 632 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 709
Cdd:TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEA 339
|
|
| FtsH_fam |
TIGR01241 |
ATP-dependent metalloprotease FtsH; HflB(FtsH) is a pleiotropic protein required for correct ... |
210-457 |
6.15e-77 |
|
ATP-dependent metalloprotease FtsH; HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 273520 [Multi-domain] Cd Length: 495 Bit Score: 257.98 E-value: 6.15e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 210 EESLNEVGYDDIGGCRKQLAQIKEMVELpLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 289
Cdd:TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 290 MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERRIvSQLLTLMDGLKQRAHVIVMAATNRP 365
Cdd:TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAglggGNDEREQTL-NQLLVEMDGFGTNTGVIVIAATNRP 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 366 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 445
Cdd:TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEI 283
|
250
....*....|....
7RLC_A 446 DLED--ETIDAEVM 457
Cdd:TIGR01241 284 TMNDieEAIDRVIA 297
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
218-449 |
5.51e-73 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 245.45 E-value: 5.51e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 218 YDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 297
Cdd:PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDG 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 298 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRR 374
Cdd:PTZ00361 262 PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATsgGEKEiQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIR 341
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
7RLC_A 375 FGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 449
Cdd:PTZ00361 342 PGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQAD 416
|
|
| FtsH_fam |
TIGR01241 |
ATP-dependent metalloprotease FtsH; HflB(FtsH) is a pleiotropic protein required for correct ... |
485-713 |
7.84e-73 |
|
ATP-dependent metalloprotease FtsH; HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 273520 [Multi-domain] Cd Length: 495 Bit Score: 246.81 E-value: 7.84e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 485 EVPQVTWEDIGGLEDVKRELQELVQYpVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 564
Cdd:TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 565 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 644
Cdd:TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 645 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 713
Cdd:TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLA 275
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
215-440 |
1.24e-70 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 237.74 E-value: 1.24e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 215 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 294
Cdd:PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 295 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER---RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 371
Cdd:PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADRevqRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 372 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 440
Cdd:PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
489-702 |
9.54e-68 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 236.87 E-value: 9.54e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 489 VTWEDIGGLEDVKRELQELVQYpVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 568
Cdd:CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 569 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 648
Cdd:CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAAL 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
7RLC_A 649 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 702
Cdd:CHL00176 339 LRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADL 392
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
216-453 |
1.56e-65 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 223541 [Multi-domain] Cd Length: 596 Bit Score: 229.51 E-value: 1.56e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 216 VGYDDIGGCRKQLAQIKEMVElPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP---EIMSK 292
Cdd:COG0465 147 VTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSdfvEMFVG 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 293 LaGESESnlRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIV-SQLLTLMDGLKQRAHVIVMAATNRPNSID 369
Cdd:COG0465 226 V-GASRV--RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGlgGGNDEREQTlNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 370 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 449
Cdd:COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382
|
....*.
7RLC_A 450 --ETID 453
Cdd:COG0465 383 ieEAID 388
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
487-709 |
1.49e-62 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 223541 [Multi-domain] Cd Length: 596 Bit Score: 221.42 E-value: 1.49e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 487 PQVTWEDIGGLEDVKRELQELVQYpVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 566
Cdd:COG0465 145 VKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 567 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 646
Cdd:COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
7RLC_A 647 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 709
Cdd:COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEA 366
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
216-453 |
1.04e-61 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 219.92 E-value: 1.04e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 216 VGYDDIGGCRKQLAQIKEMVELpLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 295
Cdd:CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 296 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK----THGEVERrIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 371
Cdd:CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAgiggGNDEREQ-TLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 372 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE--D 449
Cdd:CHL00176 338 LLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKeiD 417
|
....
7RLC_A 450 ETID 453
Cdd:CHL00176 418 TAID 421
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
485-713 |
7.32e-61 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 211.16 E-value: 7.32e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 485 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 564
Cdd:PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 565 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 644
Cdd:PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 645 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 713
Cdd:PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQA 366
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
488-713 |
5.83e-60 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 215.28 E-value: 5.83e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 488 QVTWEDIGGLEDVKRELQELVQYpVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 567
Cdd:PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 568 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 647
Cdd:PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
7RLC_A 648 ILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 713
Cdd:PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFA 372
|
|
| pup_AAA |
TIGR03689 |
proteasome ATPase; In the Actinobacteria, as shown for Mycobacterium tuberculosis, some ... |
202-458 |
1.76e-58 |
|
proteasome ATPase; In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 200312 [Multi-domain] Cd Length: 512 Bit Score: 208.02 E-value: 1.76e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 202 EPIKR-EDEEESLNE---VGYDDIGGCRKQLAQIKEMVELPLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANET 277
Cdd:TIGR03689 161 EAIPRtEVEDLVLEEvpdVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAVANSL 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 278 G----------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIApkreKTHG-----EVERR 338
Cdd:TIGR03689 241 AarigaegggkSYFLNIKGPELLNKYVGETERQIRLIFQRAREKAsegrPVIVFFDEMDSLF----RTRGsgvssDVETT 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 339 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHtknmkLADDVDLEQVANET 418
Cdd:TIGR03689 317 VVPQLLAEIDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAKY-----LTDDLPLPEDLAAH 391
|
250 260 270 280
....*....|....*....|....*....|....*....|..
7RLC_A 419 HGHVGADLAALCSEA--ALQAIRKKMDLIDLEDETIDAEVMN 458
Cdd:TIGR03689 392 DGDREATAAALIQRVvdALYARSEANRYVEVTYANGSTEVLY 433
|
|
| pup_AAA |
TIGR03689 |
proteasome ATPase; In the Actinobacteria, as shown for Mycobacterium tuberculosis, some ... |
468-684 |
2.41e-58 |
|
proteasome ATPase; In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 200312 [Multi-domain] Cd Length: 512 Bit Score: 207.64 E-value: 2.41e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 468 RWALSQSNPSALRETVV-EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 546
Cdd:TIGR03689 157 GYAFEAIPRTEVEDLVLeEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAV 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 547 ANE-CQ---------ANFISIKGPELLTMWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGDGGGAA 612
Cdd:TIGR03689 237 ANSlAArigaegggkSYFLNIKGPELLNKYVGETERQIRLIFQRAREKAsegrPVIVFFDEMDSLFRTRGSGVSSDVETT 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
7RLC_A 613 drVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-PVAKD 684
Cdd:TIGR03689 317 --VVPQLLAEIDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFAKYLTDDlPLPED 387
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
218-439 |
4.06e-58 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 209.89 E-value: 4.06e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 218 YDDIGGCRKQLAQIKEMVELpLRHPALFKEIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 297
Cdd:PRK10733 151 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVG 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 298 ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIvSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 373
Cdd:PRK10733 230 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGlgggHDEREQTL-NQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
7RLC_A 374 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 439
Cdd:PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 374
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
483-713 |
5.44e-55 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 196.15 E-value: 5.44e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 483 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 563 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 642
Cdd:PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
7RLC_A 643 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 713
Cdd:PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLA 404
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA). AAA family proteins often ... |
256-385 |
7.34e-55 |
|
ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 365803 Cd Length: 131 Bit Score: 185.11 E-value: 7.34e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 335
Cdd:pfam00004 1 VLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELLSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
7RLC_A 336 ERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRfGRFDREVDIG 385
Cdd:pfam00004 81 SRRVVNQLLTELDGFTSSlSKVIVIGATNRPDKLDPALLR-GRFDRIIEVP 130
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA). AAA family proteins often ... |
529-662 |
3.98e-54 |
|
ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 365803 Cd Length: 131 Bit Score: 183.18 E-value: 3.98e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 529 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARggnIGDG 608
Cdd:pfam00004 1 VLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELLSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSR---GSGG 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
7RLC_A 609 GGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDIIDPAILRpGRLDQLIYIPL 662
Cdd:pfam00004 78 DSESRRVVNQLLTELDGFTSSLsKVIVIGATNRPDKLDPALLR-GRFDRIIEVPL 131
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
145-449 |
5.17e-54 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 224144 [Multi-domain] Cd Length: 368 Bit Score: 191.18 E-value: 5.17e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 145 LFEVYLKPYFlEAYRpIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEpikREDEEESLNEVGYDDIGGc 224
Cdd:COG1223 52 VFNIYARDQW-LGEV-VREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETP---REEDREIISDITLDDVIG- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 225 rKQLAQIK-EMVELPLRHPALFKEIGvkpPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 303
Cdd:COG1223 126 -QEEAKRKcRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 304 AFEEAEKNAPAIIFIDELDAIAPKRE--KTHGEVErRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRrfGRFDRE 381
Cdd:COG1223 202 LYERARKAAPCIVFIDELDAIALDRRyqELRGDVS-EIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR--SRFEEE 278
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 382 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL-QAIRKKMDLIDLED 449
Cdd:COG1223 279 IEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALhRAIAEDREKVERED 347
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
485-704 |
1.68e-52 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 224144 [Multi-domain] Cd Length: 368 Bit Score: 186.94 E-value: 1.68e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 485 EVPQVTWEDIGGLEDVKRELQELVQYpVEHPDKFLKFGmtpSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 564
Cdd:COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 565 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAadRVINQILTEMDGMSTKKNVFIIGATNRPDII 644
Cdd:COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGIKENEGVVTIAATNRPELL 267
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 645 DPAIlrPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 704
Cdd:COG1223 268 DPAI--RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE 325
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
495-662 |
3.94e-30 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 116.09 E-value: 3.94e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 495 GGLEDVKRELQELVQYPvehpdkflkfgmtPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESE 571
Cdd:cd00009 1 VGQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNASDLLEGLVVAEL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 572 AN---VREIFDKARQAAPCVLFFDELDSIAKArggnigdgggAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 648
Cdd:cd00009 68 FGhflVRLLFELAEKAKPGVLFIDEIDSLSRG----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137
|
170
....*....|....
7RLC_A 649 LRPGRLDQLIYIPL 662
Cdd:cd00009 138 ALYDRLDIRIVIPL 151
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
222-385 |
9.62e-30 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 114.94 E-value: 9.62e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 222 GGCRKQLAQIKEMVELPlrhpalfkeigvkPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESE 298
Cdd:cd00009 1 VGQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNASDLLEGLVVAEL 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 299 ---SNLRKAFEEAEKNAPAIIFIDELDAIAPkrekthgEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 375
Cdd:cd00009 68 fghFLVRLLFELAEKAKPGVLFIDEIDSLSR-------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALY 140
|
170
....*....|
7RLC_A 376 GRFDREVDIG 385
Cdd:cd00009 141 DRLDIRIVIP 150
|
|
| ycf46 |
CHL00195 |
Ycf46; Provisional |
425-707 |
5.47e-26 |
|
Ycf46; Provisional
Pssm-ID: 177094 [Multi-domain] Cd Length: 489 Bit Score: 112.42 E-value: 5.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 425 DLAALCSEAALQAIRKKMDLIDLEDETIDAevmNSLAVTMDDFRWALSQSNpsalretVVEV--PQVTWEDIGGLEDVKR 502
Cdd:CHL00195 169 NLTRACQGLSLERIRRVLSKIIATYKTIDE---NSIPLILEEKKQIISQTE-------ILEFysVNEKISDIGGLDNLKD 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 503 ELQelvQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR 582
Cdd:CHL00195 239 WLK---KRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 583 QAAPCVLFFDELDsiaKA-RGGNIGDGGGAADRVINQILTemdGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYI 660
Cdd:CHL00195 316 ALSPCILWIDEID---KAfSNSESKGDSGTTNRVLATFIT---WLSEKKSpVFVVATANNIDLLPLEILRKGRFDEIFFL 389
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
7RLC_A 661 PLPDEKSRVAILKANLRKS-PVA-KDVDLEFLAKMTNGFSGAdltEICQ 707
Cdd:CHL00195 390 DLPSLEEREKIFKIHLQKFrPKSwKKYDIKKLSKLSNKFSGA---EIEQ 435
|
|
| CDC48_N |
pfam02359 |
Cell division protein 48 (CDC48), N-terminal domain. This domain has a double psi-beta barrel ... |
40-121 |
2.68e-23 |
|
Cell division protein 48 (CDC48), N-terminal domain. This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.
Pssm-ID: 376770 Cd Length: 84 Bit Score: 94.19 E-value: 2.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 40 RLIVDEAINED--NSVVSLSQPKMDELQLFRGDTVLLKGKKRreAVCIVLSDDTC--SDEKIRMNRVVRNNLRVRLGDVI 115
Cdd:pfam02359 1 RLRVAEAPDRDvgRGIARLDPEDMEELGLFPGDVVEIKGKRK--TVAIVWSAYPEdeGPGIIRMDGVTRKNAGVSIGDTV 78
|
....*.
7RLC_A 116 SIQPCP 121
Cdd:pfam02359 79 TVRPAE 84
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
525-664 |
3.19e-20 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 87.81 E-value: 3.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 525 PSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIKGPELL--------------TMWFGESEANVREIFDKARQAAPC 587
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPgggVIYIDGEDILeevldqllliivggKKASGSGELRLRLALALARKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 588 VLFFDELDSIAKARggnigdggGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPgRLDQLIYIPLPD 664
Cdd:smart00382 81 VLILDEITSLLDAE--------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
252-388 |
9.16e-20 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 86.66 E-value: 9.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 252 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMS--------------KLAGESESNLRKAFEEAEKNAPA 314
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARElgpPGGGVIYIDGEDILEevldqllliivggkKASGSGELRLRLALALARKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
7RLC_A 315 IIFIDELDAIAPKREKthgevERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFgRFDREVDIGIPD 388
Cdd:smart00382 81 VLILDEITSLLDAEQE-----ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
|
|
| CDC48_N |
smart01073 |
Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel ... |
41-120 |
1.28e-19 |
|
Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.
Pssm-ID: 215012 [Multi-domain] Cd Length: 82 Bit Score: 83.81 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 41 LIVDEAINED---NSVVSLSQPKMDELQLFRGDTVLLKGKKRreAVCIVLSDDTC-SDEKIRMNRVVRNNLRVRLGDVIS 116
Cdd:smart01073 1 LRVAEAPSDEdvgRGIARLSPEDMDELGLFPGDYVLITGKRR--TVAIVWPAYPEdPGGIIRIDGVQRKNAGVSIGDTVT 78
|
....
7RLC_A 117 IQPC 120
Cdd:smart01073 79 VRKA 82
|
|
| ycf46 |
CHL00195 |
Ycf46; Provisional |
219-426 |
6.73e-18 |
|
Ycf46; Provisional
Pssm-ID: 177094 [Multi-domain] Cd Length: 489 Bit Score: 87.38 E-value: 6.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 219 DDIGGcrkqLAQIKEMveLPLRHPALFK---EIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 295
Cdd:CHL00195 228 SDIGG----LDNLKDW--LKKRSTSFSKqasNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 296 ESESNLRKAFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERRIVSQLLTLMDglKQRAHVIVMAATNRPNSIDPALRR 374
Cdd:CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDkAFSNSESKGDSGTTNRVLATFITWLS--EKKSPVFVVATANNIDLLPLEILR 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
7RLC_A 375 FGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGADL 426
Cdd:CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFrpKSWKKYDIKKLSKLSNKFSGAEI 433
|
|
| CDC48_2 |
smart01072 |
Cell division protein 48 (CDC48) domain 2; This domain has a double psi-beta barrel fold and ... |
146-206 |
4.11e-13 |
|
Cell division protein 48 (CDC48) domain 2; This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases is a substrate 185-residue recognition domain.
Pssm-ID: 215011 Cd Length: 64 Bit Score: 64.54 E-value: 4.11e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
7RLC_A 146 FEVYLKPYFLEayRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKR 206
Cdd:smart01072 6 FAEYVKRKLLG--RPVTKGDTIVVPFLGKALPFVVVSTEPSGPVIVTDDTEIEILEKPVEE 64
|
|
| AAA_lid_3 |
pfam17862 |
AAA+ lid domain. This entry represents the alpha helical AAA+ lid domain that is found to the ... |
408-449 |
1.58e-12 |
|
AAA+ lid domain. This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 380037 Cd Length: 45 Bit Score: 62.19 E-value: 1.58e-12
10 20 30 40
....*....|....*....|....*....|....*....|..
7RLC_A 408 DVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 449
Cdd:pfam17862 1 DVDLEELAERTEGFSGADLEALCREAALAALRRGLEAITQED 42
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
256-320 |
5.58e-12 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 68.57 E-value: 5.58e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPeimskLAGESEsnLRKAFEEAEKNAPA----IIFIDE 320
Cdd:PRK13342 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAV-----TSGVKD--LREVIEEARQRRSAgrrtILFIDE 100
|
|
| CDC48_2 |
pfam02933 |
Cell division protein 48 (CDC48), domain 2. This domain has a double psi-beta barrel fold and ... |
146-205 |
1.57e-10 |
|
Cell division protein 48 (CDC48), domain 2. This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases pfam00004 is a substrate 185-residue recognition domain.
Pssm-ID: 376967 Cd Length: 63 Bit Score: 57.16 E-value: 1.57e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 146 FEVYLKPYFLEayRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIK 205
Cdd:pfam02933 5 ELAYVKRNLEG--RPVSKGDTIVVEFLGQPIDLKVVSTEPSGPVVVTETTEIEIGEKPVQ 62
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
517-593 |
1.63e-09 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 60.48 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 517 KFLKFGMTPSkgVLFYGPPGCGKTLLAKAIANECQANFISIKGPElltmwfgESEANVREIFDKARQAA----PCVLFFD 592
Cdd:PRK13342 29 RMIEAGRLSS--MILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRsagrRTILFID 99
|
.
7RLC_A 593 E 593
Cdd:PRK13342 100 E 100
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; |
254-425 |
2.01e-09 |
|
MoxR-like ATPase [General function prediction only];
Pssm-ID: 223786 [Multi-domain] Cd Length: 329 Bit Score: 59.76 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 254 RGILLYGPPGTGKTLIARAVANETGAFFFLING-PEIM-SKLAGESESNLRKAFEEAEK--------NAPAIIFIDELDA 323
Cdd:COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCtPDLLpSDLLGTYAYAALLLEPGEFRfvpgplfaAVRVILLLDEINR 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 324 IAPKREKT-HGEVERRIVSqlLTLMDGLKQRAHVIVMAATNRPNSID-----PALRRfgRFDREVDIGIPDA-------- 389
Cdd:COG0714 124 APPEVQNAlLEALEERQVT--VPGLTTIRLPPPFIVIATQNPGEYEGtyplpEALLD--RFLLRIYVDYPDSeeeeriil 199
|
170 180 190
....*....|....*....|....*....|....*...
7RLC_A 390 --TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGAD 425
Cdd:COG0714 200 arVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSD 237
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
258-320 |
2.73e-09 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 225165 [Multi-domain] Cd Length: 436 Bit Score: 59.94 E-value: 2.73e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 258 LYGPPGTGKTLIARAVANETGAFFFLINGpeIMSKLAgesesNLRKAFEEAEKNAPA----IIFIDE 320
Cdd:COG2256 53 LWGPPGTGKTTLARLIAGTTNAAFEALSA--VTSGVK-----DLREIIEEARKNRLLgrrtILFLDE 112
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
225-418 |
7.72e-09 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 59.09 E-value: 7.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 225 RKQLAQIKEMVELPLRHpalfKEIGVKPP---RGILLYGPPGTGKTLIARAVANETgAFFFLINGPEIM----SKLAGES 297
Cdd:TIGR03922 285 KRQVAALKSSTAMALAR----AERGLPVAqtsNHMLFAGPPGTGKTTIARVVAKIY-CGLGVLRKPLVRevsrADLIGQY 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 298 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM---AATNRPNSIDPALR 373
Cdd:TIGR03922 360 IGESEAKTNEIiDSALGGVLFLDEAYTLVETGYGQKDPFGLEAIDTLLARMENDRDRLVVIGAgyrKDLDKFLEVNEGLR 439
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
7RLC_A 374 RfgRFDREVDIgipDATGRLEILQIhTKNMKLADDVDLEQVANET 418
Cdd:TIGR03922 440 S--RFTRVIEF---PSYSPDELVEI-ARRMATERDSVLDDAAADA 478
|
|
| AAA_lid_3 |
pfam17862 |
AAA+ lid domain. This entry represents the alpha helical AAA+ lid domain that is found to the ... |
684-713 |
3.12e-08 |
|
AAA+ lid domain. This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.
Pssm-ID: 380037 Cd Length: 45 Bit Score: 50.25 E-value: 3.12e-08
10 20 30
....*....|....*....|....*....|
7RLC_A 684 DVDLEFLAKMTNGFSGADLTEICQRACKLA 713
Cdd:pfam17862 1 DVDLEELAERTEGFSGADLEALCREAALAA 30
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not ... |
255-378 |
8.97e-08 |
|
AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 336785 Cd Length: 135 Bit Score: 51.51 E-value: 8.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 255 GILLYGPPGTGKTLIARAVANET-GAFFFLINGP------------EIMSKLAGESESNLRKAFEEAEknapaIIFIDEL 321
Cdd:pfam07728 1 GVLLVGPPGTGKSTLARRLAAALcNRPVFYVQLTrdtteedlfgrrDIANGTTEWVDGPLVRAAREGE-----IAVLDEI 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
7RLC_A 322 DAIAPK-REKTHGEVERRIvsqlLTLMDG----LKQRAHVIVMAATNRP----NSIDPALRRfgRF 378
Cdd:pfam07728 76 NRANPDvLNSLLSLLDERR----LLLPDGgelvKAPPNGFRLIATMNPLprglNELSPALRS--RF 135
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
256-466 |
1.34e-07 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 223666 [Multi-domain] Cd Length: 408 Bit Score: 54.60 E-value: 1.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 256 ILLYGPPGTGKTLIARAVANEtgaffFLINGPEimSKLAGESESNLRKAFEEAEKNAPAIIF----------IDELDAIA 325
Cdd:COG0593 116 LFIYGGVGLGKTHLLQAIGNE-----ALANGPN--ARVVYLTSEDFTNDFVKALRDNEMEKFkekysldlllIDDIQFLA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 326 PKREKthgevERRIVSQLLTLMDGLKQrahvIVMAATNRP---NSIDPALRRfgRFDR--EVDIGIPDATGRLEILQIH- 399
Cdd:COG0593 189 GKERT-----QEEFFHTFNALLENGKQ----IVLTSDRPPkelNGLEDRLRS--RLEWglVVEIEPPDDETRLAILRKKa 257
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
7RLC_A 400 -TKNMKLADDVdLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDD 466
Cdd:COG0593 258 eDRGIEIPDEV-LEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEKITIED 324
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
231-395 |
2.65e-07 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 53.07 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 231 IKEMVeLPLRHPALFKEIgVKPPR--GILLYGP-PGTGKTLIARAVANETGAFFFLINGpeimSKLAGESESNLRKAFEE 307
Cdd:PHA02544 20 IDECI-LPAADKETFKSI-VKKGRipNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNG----SDCRIDFVRNRLTRFAS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 308 A--EKNAPAIIFIDELDaiapkREKTHgEVERrivsQLLTLMDGLKQRAHVIVMAatNRPNSIDPALRrfGRFdREVDIG 385
Cdd:PHA02544 94 TvsLTGGGKVIIIDEFD-----RLGLA-DAQR----HLRSFMEAYSKNCSFIITA--NNKNGIIEPLR--SRC-RVIDFG 158
|
170
....*....|
7RLC_A 386 IPDATGRLEI 395
Cdd:PHA02544 159 VPTKEEQIEM 168
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
531-593 |
2.99e-07 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 225165 [Multi-domain] Cd Length: 436 Bit Score: 53.39 E-value: 2.99e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 531 FYGPPGCGKTLLAKAIANECQANFISIKGpelltMWFGESEanVREIFDKARQAAPC----VLFFDE 593
Cdd:COG2256 53 LWGPPGTGKTTLARLIAGTTNAAFEALSA-----VTSGVKD--LREIIEEARKNRLLgrrtILFLDE 112
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
257-320 |
3.18e-07 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 53.91 E-value: 3.18e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 257 LLYGPPGTGKTLIARAVANETGAFFFLINgpeimSKLAGESEsnLRKAFEEAEK-----NAPAIIFIDE 320
Cdd:PRK13341 56 ILYGPPGVGKTTLARIIANHTRAHFSSLN-----AVLAGVKD--LRAEVDRAKErlerhGKRTILFIDE 117
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC ... |
529-562 |
9.13e-07 |
|
Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 377518 Cd Length: 159 Bit Score: 49.42 E-value: 9.13e-07
10 20 30
....*....|....*....|....*....|....
7RLC_A 529 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:pfam05496 36 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAI 69
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
496-642 |
1.39e-06 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 51.77 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 496 GLEDVKRELqELVQYPVEHPDKFLKFGMT---PSKGVLFYGPPGCGKTLLAKAIANE-C------QANFISIKGPELLTM 565
Cdd:TIGR03922 280 GLERVKRQV-AALKSSTAMALARAERGLPvaqTSNHMLFAGPPGTGKTTIARVVAKIyCglgvlrKPLVREVSRADLIGQ 358
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 566 WFGESEANVREIFDKARQAapcVLFFDELDSIAKARGGNIGDGGGAAdrvINQILTEMDGMSTKKNVFIIGATNRPD 642
Cdd:TIGR03922 359 YIGESEAKTNEIIDSALGG---VLFLDEAYTLVETGYGQKDPFGLEA---IDTLLARMENDRDRLVVIGAGYRKDLD 429
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
529-562 |
1.68e-06 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 50.90 E-value: 1.68e-06
10 20 30
....*....|....*....|....*....|....
7RLC_A 529 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit [Replication, ... |
256-326 |
1.82e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit [Replication, recombination and repair];
Pssm-ID: 225164 [Multi-domain] Cd Length: 332 Bit Score: 50.63 E-value: 1.82e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEImsklagESESNLRKAFEEAEKNapAIIFIDELDAIAP 326
Cdd:COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLEEG--DVLFIDEIHRLSP 117
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
230-329 |
4.33e-06 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 49.22 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 230 QIKEMVELPLRHPALFKEigvkPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM--SKLAGesesnLRKAFEE 307
Cdd:TIGR00635 11 KVKEQLQLFIEAAKMRQE----ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEkpGDLAA-----ILTNLEE 81
|
90 100
....*....|....*....|..
7RLC_A 308 AEknapaIIFIDELDAIAPKRE 329
Cdd:TIGR00635 82 GD-----VLFIDEIHRLSPAVE 98
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit [Replication, ... |
529-562 |
4.40e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit [Replication, recombination and repair];
Pssm-ID: 225164 [Multi-domain] Cd Length: 332 Bit Score: 49.48 E-value: 4.40e-06
10 20 30
....*....|....*....|....*....|....
7RLC_A 529 VLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
251-374 |
4.61e-06 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 49.92 E-value: 4.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 251 KPPRGILLYGPPGTGKTLIARAVANETGafFFLI--NGP-----EIMSKLAGESeSNLRKAFEEAEKnapaIIFIDELDA 323
Cdd:PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYG--WEVIelNASdqrtaDVIERVAGEA-ATSGSLFGARRK----LILLDEVDG 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
7RLC_A 324 IapkrektHGEVERRIVSQLLTLmdgLKQRAHVIVMAATN---------------------RPNSIDPALRR 374
Cdd:PRK04195 110 I-------HGNEDRGGARAILEL---IKKAKQPIILTANDpydpslrelrnaclmiefkrlSTRSIVPVLKR 171
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
490-549 |
6.08e-06 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 49.53 E-value: 6.08e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 490 TWEDIGGLEDVKRELQELVqypvehpDKFLKfgMTPSKGVLFYGPPGCGKTLLAKAIANE 549
Cdd:PRK04195 12 TLSDVVGNEKAKEQLREWI-------ESWLK--GKPKKALLLYGPPGVGKTSLAHALAND 62
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of ... |
253-359 |
8.51e-06 |
|
AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.
Pssm-ID: 379062 Cd Length: 166 Bit Score: 46.75 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 253 PRGILLYGPPGTGKTLIARAV---ANETGAFFFLINGPEIMSKLA---GESESNLRKAFEEAEKNAPAIIFIDELDAIAP 326
Cdd:pfam13191 23 PPLVLLTGEAGTGKTSLLRELlraLEEDGVYVLRGKCDECLRPSAlleALTREGLLRQLLDELESSLLEAWRDRLLEELA 102
|
90 100 110
....*....|....*....|....*....|...
7RLC_A 327 KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 359
Cdd:pfam13191 103 PVPELAGDLAERLLDLLLRLLDLLARDERPLVL 135
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
254-304 |
1.57e-05 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 224145 [Multi-domain] Cd Length: 450 Bit Score: 48.12 E-value: 1.57e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
7RLC_A 254 RGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAGESES---NLRKA 304
Cdd:COG1224 66 RGILIVGPPGTGKTALAMGIARELGEdvPFVAISGSEIYSLEVKKTEAltqALRRA 121
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
256-326 |
1.98e-05 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 47.43 E-value: 1.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGeSESNLrkafEEAEknapaIIFIDELDAIAP 326
Cdd:PRK00080 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPgdLAA-ILTNL----EEGD-----VLFIDEIHRLSP 116
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
490-562 |
2.09e-05 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 47.29 E-value: 2.09e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
7RLC_A 490 TWEDIGGLEDVKRELQ------ELVQYPVEHpdkflkfgmtpskgVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 562
Cdd:TIGR00635 2 LLAEFIGQEKVKEQLQlfieaaKMRQEALDH--------------LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPAL 66
|
|
| TIP49 |
pfam06068 |
TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and ... |
254-304 |
2.33e-05 |
|
TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 368730 Cd Length: 347 Bit Score: 47.30 E-value: 2.33e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
7RLC_A 254 RGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESES---NLRKA 304
Cdd:pfam06068 51 RAVLIAGPPGTGKTALAIAISKELGEDtpFTSISGSEVYSLEMKKTEAltqAFRKA 106
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein ... |
257-561 |
3.77e-05 |
|
ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 223616 [Multi-domain] Cd Length: 786 Bit Score: 47.27 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 257 LLYGPPGTGKTLIARAVANEtgafffLING--PEIMS----------------KLAGESESNLRKAFEEAEKNAPAIIFI 318
Cdd:COG0542 195 VLVGEPGVGKTAIVEGLAQR------IVNGdvPESLKdkriysldlgslvagaKYRGEFEERLKAVLKEVEKSKNVILFI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 319 DELDAI--ApkrEKTHGEVerrivsqlltlMDG---LKQ---RAHVIVMAATN----RPN-SIDPAL-RRFgrfdREVDI 384
Cdd:COG0542 269 DEIHTIvgA---GATEGGA-----------MDAanlLKPalaRGELRCIGATTldeyRKYiEKDAALeRRF----QKVLV 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 385 GIPDATGRLEILQ-IHTK-----NMKLADDVdLEQVANETHGHVGA----DLA-----ALCSEAALQaIRKKMDLIDLED 449
Cdd:COG0542 331 DEPSVEDTIAILRgLKERyeahhGVRITDEA-LVAAVTLSDRYIPDrflpDKAidlldEAGARVRLE-IDKPEELDELER 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 450 ETIDAEVMNSLAVTMDDFR--------WALSQSNPSALRETVVEvpQVTWEDIGG--------------------LEDVK 501
Cdd:COG0542 409 ELAQLEIEKEALEREQDEKekklideiIKLKEGRIPELEKELEA--EVDEDDIAEvvarwtgipvaklledekekLLNLE 486
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
7RLC_A 502 RELQELV--Q----YPVEHPDKFLKFGMT-PSKGV---LFYGPPGCGKTLLAKAIA---NECQANFISIKGPE 561
Cdd:COG0542 487 RRLKKRVigQdeavEAVSDAIRRARAGLGdPNRPIgsfLFLGPTGVGKTELAKALAealFGDEQALIRIDMSE 559
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
253-504 |
5.34e-05 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 224391 [Multi-domain] Cd Length: 366 Bit Score: 46.19 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 253 PRGILLYGPPGTGKTLIARAVANE-----TGAFFFLING----------PEIMSKLAGESESNLR-----KAFEEA--EK 310
Cdd:COG1474 42 PSNIIIYGPTGTGKTATVKFVMEEleessANVEVVYINClelrtpyqvlSKILNKLGKVPLTGDSsleilKRLYDNlsKK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 311 NAPAIIFIDELDAIAPKREKthgeverrIVSQLLTLMDGLKQRAHVIVMAAT-NRPNSIDPALR-RFGRFD---REVDIG 385
Cdd:COG1474 122 GKTVIVILDEVDALVDKDGE--------VLYSLLRAPGENKVKVSIIAVSNDdKFLDYLDPRVKsSLGPSEivfPPYTAE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 386 ipdatgrlEILQIHTK--NMKLADDVDLEQV-------ANETHGHVGADLaALCSEAALQAIRKKMDLIDlEDETIDAEV 456
Cdd:COG1474 194 --------ELYDILRErvEEGFSAGVIDDDVlkliaalVAAESGDARKAI-DILRRAGEIAEREGSRKVS-EDHVREAQE 263
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
7RLC_A 457 MNSLAVTMDDFRwALSQSNPSALRETVVevpQVTWEDIGGLEDVKREL 504
Cdd:COG1474 264 EIERDVLEEVLK-TLPLHQKIVLLAIVE---LTVEISTGELYDVYESL 307
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; |
529-704 |
5.93e-05 |
|
MoxR-like ATPase [General function prediction only];
Pssm-ID: 223786 [Multi-domain] Cd Length: 329 Bit Score: 45.89 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 529 VLFYGPPGCGKTLLAKAIANECQANFISIKG-PELL-TMWFGESEANVREIFDKAR--------QAAPCVLFFDELDsia 598
Cdd:COG0714 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCtPDLLpSDLLGTYAYAALLLEPGEFrfvpgplfAAVRVILLLDEIN--- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 599 karggnigdggGAADRVINQILTEMD-------GMSTKK---NVFIIGATNRPDIID-----PAILRpgRLDQLIYIPLP 663
Cdd:COG0714 123 -----------RAPPEVQNALLEALEerqvtvpGLTTIRlppPFIVIATQNPGEYEGtyplpEALLD--RFLLRIYVDYP 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
7RLC_A 664 DEK-------SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 704
Cdd:COG0714 190 DSEeeeriilARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSD 237
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
253-321 |
6.55e-05 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 224401 [Multi-domain] Cd Length: 254 Bit Score: 45.09 E-value: 6.55e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 253 PRGILLYGPPGTGKTLIARAVANE---TGAFFFLINGPEIMSKLA-----GESESNLRKAFEEAEknapaIIFIDEL 321
Cdd:COG1484 105 GENLVLLGPPGVGKTHLAIAIGNEllkAGISVLFITAPDLLSKLKaafdeGRLEEKLLRELKKVD-----LLIIDDI 176
|
|
| Vps4_C |
pfam09336 |
Vps4 C terminal oligomerization domain. This domain is found at the C terminal of ATPase ... |
733-775 |
7.93e-05 |
|
Vps4 C terminal oligomerization domain. This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.
Pssm-ID: 370443 Cd Length: 61 Bit Score: 40.94 E-value: 7.93e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
7RLC_A 733 SAMEVEEDD-PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 775
Cdd:pfam09336 15 TWMDIPSDKlLEPPVTMKDFLKALKNSRPTVSKEDLEKHEEFTK 58
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC ... |
256-320 |
8.87e-05 |
|
Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 377518 Cd Length: 159 Bit Score: 43.64 E-value: 8.87e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK--LAGesesnLRKAFEEAEknapaIIFIDE 320
Cdd:pfam05496 36 VLLYGPPGLGKTTLANIIANEMGVNIRITSGPAIERAgdLAA-----ILTNLEPGD-----VLFIDE 92
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
530-557 |
1.37e-04 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 45.43 E-value: 1.37e-04
10 20
....*....|....*....|....*...
7RLC_A 530 LFYGPPGCGKTLLAKAIANECQANFISI 557
Cdd:PRK13341 56 ILYGPPGVGKTTLARIIANHTRAHFSSL 83
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected ... |
529-599 |
1.43e-04 |
|
AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 369486 Cd Length: 168 Bit Score: 42.95 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 529 VLFYGPPGCGKTLLAKAIANE---CQANFISIKGPELL-----TMWFGESEANVR-----EIFDKARQAAPCVLFFDELD 595
Cdd:pfam07724 6 FLFLGPTGVGKTELAKALAELlfgDERALIRIDMSEYMeehsvSRLIGAPPGYVGyeeggQLTEAVRRKPYSIVLIDEIE 85
|
....
7RLC_A 596 SIAK 599
Cdd:pfam07724 86 KAHP 89
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
527-594 |
1.48e-04 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 224401 [Multi-domain] Cd Length: 254 Bit Score: 44.32 E-value: 1.48e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
7RLC_A 527 KGVLFYGPPGCGKTLLAKAIANECQANFIS---IKGPELLTMW-FGESEANVREIFDKARQAAPcVLFFDEL 594
Cdd:COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISvlfITAPDLLSKLkAAFDEGRLEEKLLRELKKVD-LLIIDDI 176
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
230-276 |
2.93e-04 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 43.78 E-value: 2.93e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
7RLC_A 230 QIKEMVELpLRhPALFkeiGVKPPRgILLYGPPGTGKTLIARAVANE 276
Cdd:TIGR02928 23 QIEELAKA-LR-PILR---GSRPSN-VFIYGKTGTGKTAVTKYVMKE 63
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected ... |
256-381 |
3.15e-04 |
|
AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 369486 Cd Length: 168 Bit Score: 42.18 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIM-----SKLAGESESNLRKA-----FEEAEKNAPAIIFIDELd 322
Cdd:pfam07724 6 FLFLGPTGVGKTELAKALAELLFGDeraLIRIDMSEYMeehsvSRLIGAPPGYVGYEeggqlTEAVRRKPYSIVLIDEI- 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
7RLC_A 323 aiapkrEKTHGEVErRIVSQLL---TLMDGLKQRA---HVIVMAATNRpNSIDPALRRFGRFDRE 381
Cdd:pfam07724 85 ------EKAHPGVQ-NDLLQILeggTLTDKQGRTVdfkNTLFIMTGNF-GSEKISDASRIGFSPD 141
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
245-323 |
3.65e-04 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 43.09 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 245 FKEIGvKPPRGILLYGPPGTGKTLIARAVAN---ETGAFFFLINGPEIMSKLAgeSESNLRKAFEEAE-----KNAPAII 316
Cdd:PRK08116 107 FEEMK-KENVGLLLWGSVGTGKTYLAACIANeliEKGVPVIFVNFPQLLNRIK--STYKSSGKEDENEiirslVNADLLI 183
|
....*..
7RLC_A 317 fIDELDA 323
Cdd:PRK08116 184 -LDDLGA 189
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
526-549 |
6.25e-04 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 42.32 E-value: 6.25e-04
10 20
....*....|....*....|....
7RLC_A 526 SKGVLFYGPPGCGKTLLAKAIANE 549
Cdd:PRK08116 114 NVGLLLWGSVGTGKTYLAACIANE 137
|
|
| clpX |
TIGR00382 |
endopeptidase Clp ATP-binding regulatory subunit (clpX); A member of the ATP-dependent ... |
256-329 |
6.64e-04 |
|
endopeptidase Clp ATP-binding regulatory subunit (clpX); A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]
Pssm-ID: 273047 [Multi-domain] Cd Length: 413 Bit Score: 42.83 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 256 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGESESN-----LRKAFEEAEKNAPAIIFIDELDAIAPKRE 329
Cdd:TIGR00382 119 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTeAGYVGEDVENillklLQAADYDVEKAQKGIIYIDEIDKISRKSE 198
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
517-572 |
1.14e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 224145 [Multi-domain] Cd Length: 450 Bit Score: 41.95 E-value: 1.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
7RLC_A 517 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESEA 572
Cdd:COG1224 56 KMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDvpFVAISGSEIYSLEVKKTEA 113
|
|
| ycf2 |
CHL00206 |
Ycf2; Provisional |
519-660 |
1.34e-03 |
|
Ycf2; Provisional
Pssm-ID: 214396 [Multi-domain] Cd Length: 2281 Bit Score: 42.59 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 519 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----------KG-------------------------PELL 563
Cdd:CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVflnkfldnkpKGfliddididdsddiddsddidrdldTELL 1702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 564 TMWFG--------ESEANVREIFDKARQAAPCVLFFDELDSIakargGNIGDGGGAADRVINQILTEMDGMSTKKNVfII 635
Cdd:CHL00206 1703 TMMNAltmdmmpkIDRFYITLQFELAKAMSPCIIWIPNIHDL-----NVNESNYLSLGLLVNSLSRDCERCSTRNIL-VI 1776
|
170 180
....*....|....*....|....*
7RLC_A 636 GATNRPDIIDPAILRPGRLDQLIYI 660
Cdd:CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCIKI 1801
|
|
| spore_V_K |
TIGR02881 |
stage V sporulation protein K; Members of this protein family are the stage V sporulation ... |
496-599 |
1.40e-03 |
|
stage V sporulation protein K; Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. [Cellular processes, Sporulation and germination]
Pssm-ID: 163057 [Multi-domain] Cd Length: 261 Bit Score: 41.25 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 496 GLEDVKRELQELVQYPVEHpDKFLKFGMTPSKGVL---FYGPPGCGKTLLAKAIAN-------ECQANFISIKGPELLTM 565
Cdd:TIGR02881 10 GLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLhmiFKGNPGTGKTTVARILGKlfkemnvLSKGHLIEVERADLVGE 88
|
90 100 110
....*....|....*....|....*....|....
7RLC_A 566 WFGESEANVREIFDKARQAapcVLFFDELDSIAK 599
Cdd:TIGR02881 89 YIGHTAQKTREVIKKALGG---VLFIDEAYSLAR 119
|
|
| RNA_helicase |
pfam00910 |
RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding ... |
529-549 |
1.42e-03 |
|
RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 366365 Cd Length: 101 Bit Score: 38.73 E-value: 1.42e-03
10 20
....*....|....*....|.
7RLC_A 529 VLFYGPPGCGKTLLAKAIANE 549
Cdd:pfam00910 1 IWLYGPPGCGKSTLAKYLARA 21
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
256-327 |
1.98e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
7RLC_A 256 ILLYGPPGTGKTLIARAVAN---ETGAFFFLINGP------EIMSKLAGE---------SESNLRKAFEEA--EKNAPAI 315
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEqlpEVRDSVVFVDLPsgtspkDLLRALLRAlglplsgrlSKEELLAALQQLllALAVAVV 87
|
90
....*....|..
7RLC_A 316 IFIDELDAIAPK 327
Cdd:pfam13401 88 LIIDEAQHLSLE 99
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
524-549 |
2.56e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 40.65 E-value: 2.56e-03
10 20
....*....|....*....|....*.
7RLC_A 524 TPSKGVLFYGPPGCGKTLLAKAIANE 549
Cdd:PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKE 206
|
|
| Parvo_NS1 |
pfam01057 |
Parvovirus non-structural protein NS1; This family also contains the NS2 protein. Parvoviruses ... |
529-548 |
4.05e-03 |
|
Parvovirus non-structural protein NS1; This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Pssm-ID: 366441 Cd Length: 271 Bit Score: 39.98 E-value: 4.05e-03
10 20
....*....|....*....|
7RLC_A 529 VLFYGPPGCGKTLLAKAIAN 548
Cdd:pfam01057 116 VWFYGPASTGKTNLAQAIAH 135
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
529-546 |
4.07e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 307292 Cd Length: 207 Bit Score: 39.44 E-value: 4.07e-03
|
| TIP49 |
pfam06068 |
TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and ... |
527-572 |
9.37e-03 |
|
TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 368730 Cd Length: 347 Bit Score: 38.83 E-value: 9.37e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
7RLC_A 527 KGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGESEA 572
Cdd:pfam06068 51 RAVLIAGPPGTGKTALAIAISKELGEDtpFTSISGSEVYSLEMKKTEA 98
|
|
| |
