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Conserved domains on  [gi|34785711|gb|AAH57305|]
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Sfrs14 protein [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Surp super family cl47696
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 571-619 3.60e-03

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


The actual alignment was detected with superfamily member pfam01805:

Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 35.96  E-value: 3.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 34785711   571 DTIDQLVMRVIQG------RLSPRERTlllqDPAYWFLSDESSLEYKYYKLKLAE 619
Cdd:pfam01805   1 DIIKKTAQFVARNgpefeaLLMEREER----NPQFDFLFDPDDPLHAYYRWKLEE 51
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 571-619 3.60e-03

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 35.96  E-value: 3.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 34785711   571 DTIDQLVMRVIQG------RLSPRERTlllqDPAYWFLSDESSLEYKYYKLKLAE 619
Cdd:pfam01805   1 DIIKKTAQFVARNgpefeaLLMEREER----NPQFDFLFDPDDPLHAYYRWKLEE 51
 
Name Accession Description Interval E-value
Surp pfam01805
Surp module; This domain is also known as the SWAP domain. SWAP stands for ...
 571-619 3.60e-03

Surp module; This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.


Pssm-ID: 460339 [Multi-domain]  Cd Length: 52  Bit Score: 35.96  E-value: 3.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 34785711   571 DTIDQLVMRVIQG------RLSPRERTlllqDPAYWFLSDESSLEYKYYKLKLAE 619
Cdd:pfam01805   1 DIIKKTAQFVARNgpefeaLLMEREER----NPQFDFLFDPDDPLHAYYRWKLEE 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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