LysM, putative peptidoglycan-binding, domain containing 1 [Mus musculus]
Protein Classification
LysM domain-containing protein( domain architecture ID 10061503)
LysM domain-containing protein may bind peptidoglycan or chitin type carbohydrates
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| LysM | cd00118 | Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
42-84 | 2.00e-09 | ||
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. : Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 51.72 E-value: 2.00e-09
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| Name | Accession | Description | Interval | E-value | ||
| LysM | cd00118 | Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
42-84 | 2.00e-09 | ||
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 51.72 E-value: 2.00e-09
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| LysM | COG1388 | LysM repeat [Cell wall/membrane/envelope biogenesis]; |
23-85 | 2.01e-09 | ||
LysM repeat [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 440998 [Multi-domain] Cd Length: 156 Bit Score: 54.71 E-value: 2.01e-09
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| LysM | pfam01476 | LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
42-85 | 8.31e-08 | ||
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 47.01 E-value: 8.31e-08
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| LysM | smart00257 | Lysin motif; |
41-84 | 2.24e-06 | ||
Lysin motif; Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 43.20 E-value: 2.24e-06
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| Name | Accession | Description | Interval | E-value | ||
| LysM | cd00118 | Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ... |
42-84 | 2.00e-09 | ||
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes. Pssm-ID: 212030 [Multi-domain] Cd Length: 45 Bit Score: 51.72 E-value: 2.00e-09
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| LysM | COG1388 | LysM repeat [Cell wall/membrane/envelope biogenesis]; |
23-85 | 2.01e-09 | ||
LysM repeat [Cell wall/membrane/envelope biogenesis]; Pssm-ID: 440998 [Multi-domain] Cd Length: 156 Bit Score: 54.71 E-value: 2.01e-09
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| LysM | pfam01476 | LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ... |
42-85 | 8.31e-08 | ||
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known. Pssm-ID: 396179 [Multi-domain] Cd Length: 43 Bit Score: 47.01 E-value: 8.31e-08
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| LysM | smart00257 | Lysin motif; |
41-84 | 2.24e-06 | ||
Lysin motif; Pssm-ID: 197609 [Multi-domain] Cd Length: 44 Bit Score: 43.20 E-value: 2.24e-06
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| GyrB_insert | pfam18053 | DNA gyrase B subunit insert domain; This is the insert domain found in DNA gyrase B subunit ... |
47-89 | 3.03e-03 | ||
DNA gyrase B subunit insert domain; This is the insert domain found in DNA gyrase B subunit proteins. Studies indicate that the insert has two functions, acting as a steric buttress to pre-configure the primary DNA-binding site, and serving as a relay that may help coordinate communication between different functional domains. Pssm-ID: 465629 Cd Length: 167 Bit Score: 37.12 E-value: 3.03e-03
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| Blast search parameters | ||||
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