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Conserved domains on  [gi|18001019|gb|AAL55253|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Lepidosiren paradoxa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-98 7.15e-32

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00126:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 106.97  E-value: 7.15e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 7.15e-32

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 106.97  E-value: 7.15e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
12-98 3.36e-12

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 57.19  E-value: 3.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   12 FTVSLIGLAFnRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:pfam00420 10 FLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDVD 88


                 ....*..
gi 18001019   92 SLNLLRC 98
Cdd:pfam00420 89 SLNLLKG 95
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 12-97 2.09e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 36.97  E-value: 2.09e-04
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019 12 FTVSLIGlAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:COG0713 14 FAIGLYG-VLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTIDVD 92


               ....*.
gi 18001019 92 SLNLLR 97
Cdd:COG0713 93 DLNELK 98
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 1-98 7.15e-32

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 106.97  E-value: 7.15e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00126  1 MTPVHFSFSSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAAPMLLLAFSACEASAGLALLVA 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00126 81 TARTHGTDRLQNLNLLQC 98
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.57e-29

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 101.22  E-value: 1.57e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00067  1 MSPTYFTFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVA 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00067 81 TTRTHGTDHLKNLNLLQC 98
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.03e-28

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 99.15  E-value: 1.03e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00125  1 MTPTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVA 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00125 81 TTRTHGSDHLKNLNLLQC 98
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.27e-19

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 76.12  E-value: 1.27e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00107  1 MSLIYMNIMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFIMATLTILNTHFTLASMMPIILLVFAACEAAVGLALLVM 80

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00107 81 VSNTYGTDYVQNLNLLQC 98
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 4-96 1.73e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 68.05  E-value: 1.73e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   4 LVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATAR 83
Cdd:MTH00181  1 MMFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNR 80

                        90
                ....*....|...
gi 18001019  84 THGTDHLKSLNLL 96
Cdd:MTH00181 81 THGSDHLLKFNLL 93
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 1-97 6.45e-13

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 58.78  E-value: 6.45e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00043  1 MNIILIIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVL 80

                        90
                ....*....|....*..
gi 18001019  81 TARTHGTDHLKSLNLLR 97
Cdd:MTH00043 81 LSRNHNSDLVASLNLLQ 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
12-98 3.36e-12

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 57.19  E-value: 3.36e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   12 FTVSLIGLAFnRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:pfam00420 10 FLIGLYGLLL-RRNLLRVLLSLELMLNAVNLALVLFGRLTADPLPQALILTAIVIAAAEAAVGLALLVRIYRTHGTDDVD 88


                 ....*..
gi 18001019   92 SLNLLRC 98
Cdd:pfam00420 89 SLNLLKG 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 4-98 4.16e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 51.90  E-value: 4.16e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   4 LVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFqlSSPLPLPLIILSLAACEAATGLALLVATAR 83
Cdd:MTH00188  5 MILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFWFLLVGLSYM--EKELYLSLVLLTFAACEASVGLALLVSLIR 82

                        90
                ....*....|....*
gi 18001019  84 THGTDHLKSLNLLRC 98
Cdd:MTH00188 83 SHGSDYVSSLNLIKC 97
ND4L MTH00180
NADH dehydrogenase subunit 4L; Provisional
 12-97 8.52e-10

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177231  Cd Length: 99  Bit Score: 50.80  E-value: 8.52e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019  12 FTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:MTH00180 13 FILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAVK 92


                ....*.
gi 18001019  92 SLNLLR 97
Cdd:MTH00180 93 SLNLLR 98
ND4L MTH00001
NADH dehydrogenase subunit 4L; Provisional
 12-97 5.02e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177099  Cd Length: 99  Bit Score: 46.60  E-value: 5.02e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019  12 FTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:MTH00001 13 FLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISLK 92


                ....*.
gi 18001019  92 SLNLLR 97
Cdd:MTH00001 93 SLNSLR 98
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-98 1.28e-07

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 45.22  E-value: 1.28e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLAL-STWPLLfqlSSPLPLPLIILSLAACEAATGLALLV 79
Cdd:MTH00149  2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMfSSSGLI---SFSSYLFLIILTFGACEASLGLSLLV 78

                        90
                ....*....|....*....
gi 18001019  80 ATARTHGTDHLKSLNLLRC 98
Cdd:MTH00149 79 SLIRLHGNDYVSSLSSLKF 97
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 1-98 2.69e-07

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 44.36  E-value: 2.69e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   1 MTPLVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLaLSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVA 80
Cdd:MTH00013  1 MMSPLFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLAL-FIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVL 79

                        90
                ....*....|....*...
gi 18001019  81 TARTHGTDHLKSLNLLRC 98
Cdd:MTH00013 80 MTRSYGNDMLKSLTSNKC 97
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
12-97 1.76e-06

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 42.47  E-value: 1.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   12 FTVSLIGLaFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:PRK05715  15 FCIGLVGL-LLRRNAIVVLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGTIDVD 93


                 ....*.
gi 18001019   92 SLNLLR 97
Cdd:PRK05715  94 DLNELK 99
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 4-92 2.16e-06

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 42.06  E-value: 2.16e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019   4 LVFTFSSTFTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTwpLLFQLSSPLPLPLIILSLAACEAATGLALLVATAR 83
Cdd:MTH00162  3 MLLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFL--YLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIR 80


                ....*....
gi 18001019  84 THGTDHLKS 92
Cdd:MTH00162 81 SHGNDYFSS 89
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 12-97 2.09e-04

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 36.97  E-value: 2.09e-04
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019 12 FTVSLIGlAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:COG0713 14 FAIGLYG-VLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGDLDGQVFALFVIAVAAAEVAVGLAIIVALYRNRGTIDVD 92


               ....*.
gi 18001019 92 SLNLLR 97
Cdd:COG0713 93 DLNELK 98
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 68-98 1.39e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 36.09  E-value: 1.39e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 18001019   68 ACEAATGLALLVATARTHGTDHLKSLNLLRC 98
Cdd:MTH00127 402 LITAGYSLYMFLMTQRGPLPDHIIALNPSHT 432
ND4L MTH00192
NADH dehydrogenase subunit 4L; Provisional
 12-97 2.82e-03

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177240  Cd Length: 99  Bit Score: 34.13  E-value: 2.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18001019  12 FTVSLIGLAFNRSHLILTLLCLEGMMLSSFLALSTWPLLFQLSSPLPLPLIILSLAACEAATGLALLVATARTHGTDHLK 91
Cdd:MTH00192 13 FTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTITIK 92


                ....*.
gi 18001019  92 SLNLLR 97
Cdd:MTH00192 93 ALNLLR 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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