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Conserved domains on  [gi|39725995|gb|AAR29949|]
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calreticulin [Ixodes jellisoni]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calreticulin super family cl02828
Calreticulin family;
24-332 5.61e-109

Calreticulin family;


The actual alignment was detected with superfamily member pfam00262:

Pssm-ID: 395201  Cd Length: 369  Bit Score: 324.89  E-value: 5.61e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    24 EEFaDGDAWTSRWVHS--TKKGSEQGTFK-------LSAGKFHGDpEKDLGIQTSEDARFYGLSTKFE-PFSNDGKTLVV 93
Cdd:pfam00262   3 EQF-DDYDWESRWIPSkaKKDDEDDEIAKydgkwsvEEPTVYPGF-EGDKGLVLKSKAKHHAISAKLDkPIDFKNKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    94 QFTVKHEQNIDCGGGYVKLFDCS--LDQKEMHGESPYHIMFGPDICGPgTKKVHVIFNYKGKnllINKEIRCK------- 164
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSETndLDLEEFSDKTPYTIMFGPDKCGS-TNKVHFIFRHKNP---KTGEYEEKhlkkppk 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   165 --DDVYTHLYTLIVKPDNTYTVKIDNEVVESGELEKDWS--FLPPKKIKDPAAKKPEDWDDRAKIDDPEDTKPEDWDK-- 238
Cdd:pfam00262 157 irTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKppVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEda 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   239 -------------------PEHIPDPDATKPEDWDDEMDGEWEPPQINNPEFK-----GEWKPKQIDNPAYKGAWVHPEI 294
Cdd:pfam00262 237 pefipdpdatkpegwledePEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeapgcGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 39725995   295 DNPEYS--------PDPK-------LHSYKEICTLGFDLWQVKSGSIFDNILV 332
Cdd:pfam00262 317 DNPNYKgewkprkiPNPDyfedkhpFSNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
24-332 5.61e-109

Calreticulin family;


Pssm-ID: 395201  Cd Length: 369  Bit Score: 324.89  E-value: 5.61e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    24 EEFaDGDAWTSRWVHS--TKKGSEQGTFK-------LSAGKFHGDpEKDLGIQTSEDARFYGLSTKFE-PFSNDGKTLVV 93
Cdd:pfam00262   3 EQF-DDYDWESRWIPSkaKKDDEDDEIAKydgkwsvEEPTVYPGF-EGDKGLVLKSKAKHHAISAKLDkPIDFKNKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    94 QFTVKHEQNIDCGGGYVKLFDCS--LDQKEMHGESPYHIMFGPDICGPgTKKVHVIFNYKGKnllINKEIRCK------- 164
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSETndLDLEEFSDKTPYTIMFGPDKCGS-TNKVHFIFRHKNP---KTGEYEEKhlkkppk 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   165 --DDVYTHLYTLIVKPDNTYTVKIDNEVVESGELEKDWS--FLPPKKIKDPAAKKPEDWDDRAKIDDPEDTKPEDWDK-- 238
Cdd:pfam00262 157 irTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKppVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEda 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   239 -------------------PEHIPDPDATKPEDWDDEMDGEWEPPQINNPEFK-----GEWKPKQIDNPAYKGAWVHPEI 294
Cdd:pfam00262 237 pefipdpdatkpegwledePEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeapgcGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 39725995   295 DNPEYS--------PDPK-------LHSYKEICTLGFDLWQVKSGSIFDNILV 332
Cdd:pfam00262 317 DNPNYKgewkprkiPNPDyfedkhpFSNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
24-332 5.61e-109

Calreticulin family;


Pssm-ID: 395201  Cd Length: 369  Bit Score: 324.89  E-value: 5.61e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    24 EEFaDGDAWTSRWVHS--TKKGSEQGTFK-------LSAGKFHGDpEKDLGIQTSEDARFYGLSTKFE-PFSNDGKTLVV 93
Cdd:pfam00262   3 EQF-DDYDWESRWIPSkaKKDDEDDEIAKydgkwsvEEPTVYPGF-EGDKGLVLKSKAKHHAISAKLDkPIDFKNKTLVV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995    94 QFTVKHEQNIDCGGGYVKLFDCS--LDQKEMHGESPYHIMFGPDICGPgTKKVHVIFNYKGKnllINKEIRCK------- 164
Cdd:pfam00262  81 QYEVKLQNGLECGGAYIKLLSETndLDLEEFSDKTPYTIMFGPDKCGS-TNKVHFIFRHKNP---KTGEYEEKhlkkppk 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   165 --DDVYTHLYTLIVKPDNTYTVKIDNEVVESGELEKDWS--FLPPKKIKDPAAKKPEDWDDRAKIDDPEDTKPEDWDK-- 238
Cdd:pfam00262 157 irTDKLTHLYTLILRPDNTFEIRIDGEVVKSGNLLEDFKppVNPPKEIDDPNDKKPEDWDDREKIPDPNAVKPDDWDEda 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 39725995   239 -------------------PEHIPDPDATKPEDWDDEMDGEWEPPQINNPEFK-----GEWKPKQIDNPAYKGAWVHPEI 294
Cdd:pfam00262 237 pefipdpdatkpegwledePEYIPDPEATKPEDWDEEEDGEWEAPLIPNPKCEeapgcGPWKPPMIKNPKYKGKWKPPMI 316
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 39725995   295 DNPEYS--------PDPK-------LHSYKEICTLGFDLWQVKSGSIFDNILV 332
Cdd:pfam00262 317 DNPNYKgewkprkiPNPDyfedkhpFSNLEPIGAIGFELWSMSKDILFDNIYI 369
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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