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Conserved domains on  [gi|116089515|gb|ABJ55558|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Daphnia pulex]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-199 4.64e-70

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 4.64e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00165 262 NFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSC 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00165 342 FNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLK 421

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKWGALF 199
Cdd:MTH00165 422 SMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLF 460
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-199 4.64e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 4.64e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00165 262 NFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSC 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00165 342 FNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLK 421

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKWGALF 199
Cdd:MTH00165 422 SMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLF 460
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-179 1.11e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.08  E-value: 1.11e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVC 80
Cdd:COG1009  294 LAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAIT 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQY-SWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLV 159
Cdd:COG1009  373 FLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMT 452

                        170       180
                 ....*....|....*....|
gi 116089515 160 GPVVILSFTSLVSGPILSWL 179
Cdd:COG1009  453 LPLVVLAVLSLVLGLLLPGL 472
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 5-173 1.00e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 137.03  E-value: 1.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515    5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:TIGR01974 300 DIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIG 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   85 NLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGPVVI 164
Cdd:TIGR01974 380 SLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIV 459


                  ....*....
gi 116089515  165 LSFTSLVSG 173
Cdd:TIGR01974 460 LAVGSVFAG 468
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-121 4.55e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.84  E-value: 4.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515    1 IFEYDLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLV 77
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPIL 245

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 116089515   78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMF 121
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-199 4.64e-70

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 222.71  E-value: 4.64e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00165 262 NFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSC 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00165 342 FNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLK 421

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKWGALF 199
Cdd:MTH00165 422 SMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLF 460
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-194 2.59e-66

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 212.97  E-value: 2.59e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00209 258 NVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPITSIC 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00209 338 LNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLK 417

                        170       180       190
                 ....*....|....*....|....*....|....
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLK 194
Cdd:MTH00209 418 PMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLK 451
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-195 7.88e-60

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 195.83  E-value: 7.88e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00151 259 CYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGC 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00151 339 LNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSL 418

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKW 195
Cdd:MTH00151 419 PMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKL 453
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 3-194 1.26e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 187.66  E-value: 1.26e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMN 82
Cdd:MTH00207 264 ECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLL 343

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  83 LANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGPV 162
Cdd:MTH00207 344 IANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPM 423

                        170       180       190
                 ....*....|....*....|....*....|..
gi 116089515 163 VILSFTSLVSGPILSWLNFPAPVLIFLPVFLK 194
Cdd:MTH00207 424 LLLTLGAITSGSALNWWLPTPQEEPILPLQYK 455
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-199 1.80e-49

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 168.98  E-value: 1.80e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00211 287 LTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSC 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00211 367 LFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKN 446

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVLIF-LPVFLKWGALF 199
Cdd:MTH00211 447 PLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLL 486
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 5-177 2.57e-49

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 168.42  E-value: 2.57e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00004 296 DIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIG 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVE-LACQY--SWgifVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGP 161
Cdd:MTH00004 376 NLALMGTPFLSGFYSKDTIIEtLNTSYlnAW---ALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINENTPTIINP 452

                        170
                 ....*....|....*.
gi 116089515 162 VVILSFTSLVSGPILS 177
Cdd:MTH00004 453 ITRLALGSILAGLLIS 468
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 5-198 5.64e-45

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 156.99  E-value: 5.64e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00066 294 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIG 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGPVVI 164
Cdd:MTH00066 374 SLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKR 453

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 116089515 165 LSFTSLVSGPILSWLNFPA-PVLIFLPVFLKWGAL 198
Cdd:MTH00066 454 LAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAAL 488
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-179 1.11e-44

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 156.08  E-value: 1.11e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVC 80
Cdd:COG1009  294 LAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATG-TRDIRKMGGLRKKMPITAIT 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQY-SWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLV 159
Cdd:COG1009  373 FLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMT 452

                        170       180
                 ....*....|....*....|
gi 116089515 160 GPVVILSFTSLVSGPILSWL 179
Cdd:COG1009  453 LPLVVLAVLSLVLGLLLPGL 472
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-199 2.89e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 155.13  E-value: 2.89e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVC 80
Cdd:MTH00208 319 ISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSC 398

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVG 160
Cdd:MTH00208 399 IILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTN 478

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 116089515 161 PVVILSFTSLVSGPILSWLNFPAPVlIFLPVFLKWGALF 199
Cdd:MTH00208 479 PLLRLAIGTIISGWFFSNFVFNLPP-LTLPLILKSLPLI 516
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 5-177 4.14e-39

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 140.76  E-value: 4.14e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00108 297 DIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIG 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGPVVI 164
Cdd:MTH00108 377 SLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKR 456

                        170
                 ....*....|...
gi 116089515 165 LSFTSLVSGPILS 177
Cdd:MTH00108 457 LLLGSIFAGFLIS 469
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 5-173 1.00e-37

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 137.03  E-value: 1.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515    5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:TIGR01974 300 DIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIG 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   85 NLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESDYSLVGPVVI 164
Cdd:TIGR01974 380 SLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVMLLPLIV 459


                  ....*....
gi 116089515  165 LSFTSLVSG 173
Cdd:TIGR01974 460 LAVGSVFAG 468
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 5-199 1.17e-37

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 137.13  E-value: 1.17e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00020 297 DLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIG 376

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGG--GASISVCESDYSLVGPV 162
Cdd:MTH00020 377 SLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLkkAVFFHLHEGDWNLLLPL 456

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 116089515 163 VILSFTSLVSGPILSWL------NFPAPVLIF---LPVFLKWGALF 199
Cdd:MTH00020 457 GILALGSIFVGYLAKEMiwsfqiTLPPIVPLSiklLPVFLSLGGIG 502
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 5-179 4.42e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 135.29  E-value: 4.42e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:PRK06590 304 DIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIG 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVELAcqYSWG-IFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASiSVCESDYSLVGPVV 163
Cdd:PRK06590 384 TLALIGIPPFAGFFSKDEILEAA--FANGhINLFVAGLVGAFLTAFYSFRLIFLVFHGKEKEKIH-HPHESPAVMTLPLI 460

                        170       180
                 ....*....|....*....|.
gi 116089515 164 ILSFTSLVSG-----PILSWL 179
Cdd:PRK06590 461 VLAVLSVFAGalivpPFLGVL 481
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 5-140 1.06e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 131.49  E-value: 1.06e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00137 302 DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIG 381

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVE-LACQY--SWGifvLLMMFICLSLTVLYSVRLTYlsFV 140
Cdd:MTH00137 382 SLALTGTPFLAGFFSKDAIIEaLNTSHlnAWA---LTLTLIATSFTAVYSLRVVF--FV 435
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 5-173 3.96e-34

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 127.05  E-value: 3.96e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:MTH00210 298 DLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIG 377

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  85 NLSLCGVPFLAGFYSKDLIVELAC-QYSWGIFVLLMMFICLsLTVLYSVRLTYLSFVGPYGGGASI--SVCESDYSLVGP 161
Cdd:MTH00210 378 SLSLMGFPYLTGFYSKDLILELTYdKYYIAFAYWLGSFSAL-LTAFYSIRLIYLTFITNTNSKKEVfiGVHESSWNITFP 456

                        170
                 ....*....|..
gi 116089515 162 VVILSFTSLVSG 173
Cdd:MTH00210 457 LLLLAFGSIFVG 468
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
5-145 6.00e-26

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 103.95  E-value: 6.00e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNT--------QDIRSFGGLSLNFPL 76
Cdd:PRK07376 314 DIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVvghdpvlaQDMRLMGGLRKYMPI 393

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116089515  77 VTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYS---WGIfvllmMFICLSLTVLYSVRLTYLSFVGPYGG 145
Cdd:PRK07376 394 TAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANpalWFV-----GFLTAGMTAFYMFRMYFLTFEGEFRG 460
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 2-141 1.34e-22

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 94.21  E-value: 1.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   2 FEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:MTH00095 247 VEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQL 326

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  82 NLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVG 141
Cdd:MTH00095 327 LVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLS 386
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-121 4.55e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 90.84  E-value: 4.55e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515    1 IFEYDLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLV 77
Cdd:pfam00361 166 LVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLAKTMPIL 245

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 116089515   78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMF 121
Cdd:pfam00361 246 ALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVV 289
PRK12650 PRK12650
DUF4040 family protein;
4-183 3.61e-21

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 90.49  E-value: 3.61e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   4 YDLKKIIALSTLSQLGMMMFSISLGL-YEL--AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVC 80
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTpFALtaAVVHTLAHALFKSSLFMLIGVVDHQAG-TRDIRRLGSLWRRMPFTFVS 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQY---SWGIFVLLM-MFICLSLTVLYSVRLTYLSFV-GPYGGGAsisVCESD 155
Cdd:PRK12650 373 VTIAALSMAAVPPLFGFVSKEGMLTAFLEApggNAGVVLLLVgAALGAVFTFAYSARLVLGAFVdGPRDMSH---VKEAP 449

                        170       180
                 ....*....|....*....|....*...
gi 116089515 156 YSLVGPVVILSFTSLVSGPILSWLNFPA 183
Cdd:PRK12650 450 VSLWLPAALPGALSLPLGLVPGLLDAPV 477
PRK12646 PRK12646
DUF4040 family protein;
3-143 8.36e-21

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 89.43  E-value: 8.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLG-------------LYEL----AFFHLLTHALFKALLFLCAGILIHGAGnTQDIR 65
Cdd:PRK12646 295 QWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfaALFHLMNHAIFKCALFMGVGIIDHEAG-TRDIR 373

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  66 SFGGLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLIVE-LACQYSWGIFVLLMMFICLS-------LTVLYSVRLTYL 137
Cdd:PRK12646 374 ILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDaLTQTGQLSQFSLISMIIIVFigviasiFTFTYALYMVKE 453


                 ....*.
gi 116089515 138 SFVGPY 143
Cdd:PRK12646 454 VFWGKY 459
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 5-106 2.02e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 88.09  E-value: 2.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISL-GLYELAFFHLLTHALFKALLFLCAGILIHGAG-NTQDIRSFGGLSLNFPLVTVCMN 82
Cdd:MTH00032 312 DLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMML 391

                         90       100
                 ....*....|....*....|....
gi 116089515  83 LANLSLCGVPFLAGFYSKDLIVEL 106
Cdd:MTH00032 392 IGSFSIMGLPYLTGFYSKDLILEL 415
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-180 1.04e-19

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 86.13  E-value: 1.04e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHL---LTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTV 79
Cdd:PRK12644 288 QHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHSTG-TRDIRKLSGLGRRQPVLAV 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  80 CMNLANLSLCGVPFLAGFYSKDL----IVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESD 155
Cdd:PRK12644 367 VAALAAASMAGLPPLLGFVAKEAaleaVLHDGALGPAGPVVLAGIVLGSILTVAYSLRFLWGAFARKPGAFPSVAVTEMH 446

                        170       180
                 ....*....|....*....|....*...
gi 116089515 156 ---YSLVGPVVILSFTSLVSGPILSWLN 180
Cdd:PRK12644 447 rpsPLFLAPPAVLAVLGLVLGLLPAPLD 474
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-182 2.98e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 84.64  E-value: 2.98e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVCM 81
Cdd:PRK12667 318 DVKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAF 396

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  82 NLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVlLMMFICLSLTVLYSVRLTYLSFVGPYGGGASISVCESdYSLVGP 161
Cdd:PRK12667 397 LIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPA-LVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKES-PSMSVV 474

                        170       180
                 ....*....|....*....|.
gi 116089515 162 VVILSFTSLVSGPILSWLNFP 182
Cdd:PRK12667 475 ILVLALAVLILGILALFLPEI 495
ndhF CHL00025
NADH dehydrogenase subunit 5
 5-111 2.00e-18

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 82.63  E-value: 2.00e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHG--------AGNTQDIRSFGGLSLNFPL 76
Cdd:CHL00025 314 DIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSmepivgysPDKSQNMVLMGGLRKYMPI 393

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 116089515  77 VTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYS 111
Cdd:CHL00025 394 TKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYS 428
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-134 9.34e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 80.19  E-value: 9.34e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYEL---AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:COG0651  291 LAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIERATG-TRDLDKLGGLGKRMPLT 369

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLsLTVLYSVRL 134
Cdd:COG0651  370 AAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSL-LTLAYFVRI 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-187 1.65e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 79.54  E-value: 1.65e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLG---LYELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:PRK08375 290 LGQDDVKRVLAYSTVSQMGYILLGLALLtplALAAGLLHLLHHALMKGALFLAAGAIEVTYG-TRRLSELSGLGRRMPLT 368

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLsLTVLYSVRLTYLSFVGPYGGGASISVCESDYS 157
Cdd:PRK08375 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSL-LALLYFLRIWYRAFFGPPPPGSEAPKQEAPLG 447

                        170       180       190
                 ....*....|....*....|....*....|....
gi 116089515 158 LVGPVVILSFTSLVSG----PILSWLNFPAPVLI 187
Cdd:PRK08375 448 MLAPSLALALLSLLLGiyagPLLQLADAAAAGLL 481
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-142 1.26e-16

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 77.27  E-value: 1.26e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:PRK12647 278 VRQTDLKLILAYSTVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHETG-TRDITKLGGLRRAMPIT 356

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQY-SWGIFVLLMMFICLSLTVLYSVRLTYLSFVGP 142
Cdd:PRK12647 357 AAAALLAALSMAGLPPLFGFLAKELIYEALLEApLWSLILTVAAVLGNALMVAVAFLVGIKPFLGK 422
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 5-143 1.06e-15

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 74.58  E-value: 1.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLG------------LYELAF----FHLLTHALFKALLFLCAGILIHGAGnTQDIRSFG 68
Cdd:PRK12645 297 DLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGSLFMIVGIVDHETG-TRDIRKLG 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  69 GLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYS---------WGIFVLLMMFICLSLTVLYSVRLTYLSF 139
Cdd:PRK12645 376 GLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLNATeanlfsldtWGVLFPVIAWVASVFTFVYSIIFIFKTF 455


                 ....
gi 116089515 140 VGPY 143
Cdd:PRK12645 456 FGKY 459
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-142 1.58e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 74.07  E-value: 1.58e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGM--MMFSISLGLYELA-FFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:PRK12648 290 LFQHDLKGLLAYSTISHLGLitLLLGLGSPLAAVAaIFHIINHATFKASLFMAAGIIDHETG-TRDMRRLSGLRRLMPIT 368

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWG----IFVLLMMFICLSLTVLYSVRLTYLSFVGP 142
Cdd:PRK12648 369 ATLAMVAAAAMAGVPLLNGFLSKEMFFAETLDTHLLgsldWLLPVAATLAGAFSVAYSLRFIHDVFFGP 437
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 5-187 4.51e-15

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 72.94  E-value: 4.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYE-------LAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:PRK12649 301 DIKAILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPIT 379

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQ------YSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGA-SIS 150
Cdd:PRK12649 380 FIVASIAALAMAGIPPLNGFLSKEMFYETSVEmgaligGPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLGERTHDHlPHH 459

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 116089515 151 VCESDYSLVGPVVILSFTSLVSGPILSwlnFPAPVLI 187
Cdd:PRK12649 460 IHEAPYVMLIPAAFLAGLVILFGLVPS---IPIHNII 493
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-118 1.22e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 71.34  E-value: 1.22e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQdIRSFGGLSLNFPLVTVCM 81
Cdd:PRK08377 296 NVKRMIAYSSIGQVGMIALALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITLGGTE-IEKFEGLGKRMPLTALAL 374

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 116089515  82 NLANLSLCGVPFLAGFYSKDLIVELACQ--YSWGIFVLL 118
Cdd:PRK08377 375 TIGALSTVGIPLFNVFWSKFRIILAGLSagYTWPVALVL 413
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-141 1.39e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.18  E-value: 1.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQdIRSFGGLSLNFPLV 77
Cdd:PRK08668 291 ILQEDIKKLIAYSSVANGGYILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFT 369

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACqySWGIFVLL-MMFICLSLTVLYSVRLTYLSFVG 141
Cdd:PRK08668 370 FAMYLVAIISLAGIPPMSGFASKWLIFEALI--SKGMPITAfMAFFGSIGSFLYVFRPLAGVFLG 432
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 5-122 5.74e-14

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 69.23  E-value: 5.74e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLY------ELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVT 78
Cdd:PRK06525 295 DMKRLLAYSTITQLGYMFFGLSLAILgsrlalEGSIAYIFNHAFAKSLFFLVAGALSYSCG-TRLLPRLRGVLKKLPLVG 373

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 116089515  79 VCMNLANLSLCGVPFLAGFYSKDLIV----ELACQYSWGIFVLLMMFI 122
Cdd:PRK06525 374 VGFCVAALAITGVPPFNGFFSKFPIFaagfELSVEYWILLPAMVLLLI 421
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-132 4.69e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 66.90  E-value: 4.69e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   4 YDLKKIIALSTLSQLGMMMFSISLGLYEL---AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVC 80
Cdd:PRK07691 297 FDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIKITG-TTDLKKMGGLIKRYPVLGWM 375

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELAcqYSWGIFVLLMMFICLSLTVLYSV 132
Cdd:PRK07691 376 FFIAALSLAGIPPLSGFYGKFFIVEGT--FEAGFYVSGIIVLLSSLLVLYSV 425
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 1-134 1.45e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 65.29  E-value: 1.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIR-----SFGGLSLNFP 75
Cdd:MTH00063 239 LFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNcvyssILYGSWNLFY 318

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 116089515  76 LVTVCmnlanLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRL 134
Cdd:MTH00063 319 LFLLV-----LGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRL 372
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-142 2.40e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 64.73  E-value: 2.40e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYEL---------------AFFHLLTHALFKALLFLCAGILIHGAGnTQDIR 65
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAGAVIYETG-TRNLN 384

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116089515  66 SFGGLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMmfICLSLTVLYSVRLTYLSFVGP 142
Cdd:PRK08376 385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAM--IGSVLTLASFVKVFHTAFFGP 459
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
1-121 1.01e-11

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 62.99  E-value: 1.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLyEL----AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPL 76
Cdd:PRK12668 259 LLENDLRRLLSYHIVSQVGYMVAGIGIGT-ALaingAVAHAFNHILYKGLLFMSAGAVLYRTG-TEKLTELGGLYRSMPL 336

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 116089515  77 VTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMF 121
Cdd:PRK12668 337 TALFCLVGALSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLL 381
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-145 9.62e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 59.97  E-value: 9.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGlyelAFFHLlTHALFKALLFLCAGILiHGAGNTQDIRSFGGLSLNFPLVtvc 80
Cdd:PRK07234 264 LLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGAL-PSRNFTELISQMLGIGKWIPLT--- 334

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089515  81 mnLANLSLCGVPFLAGFYSKDLIVElacqYSWGIFVLLMMFICLsLTVLYSVRLTYLSFVGPYGG 145
Cdd:PRK07234 335 --MASFSIAGFPLLAGFVSKVLTLK----NLLPWQAIALNLAAV-GTAASFWKFIFLPFSADDED 392
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-139 7.87e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 57.13  E-value: 7.87e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISL---GLYELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:PRK06589 299 LKTDNIKKILAYSTISQLSLALLSAFIltpKALGAAILHLVSHSFAKICLFYSMGSIYSLKK-EDQVDKLHGTSKSFPLI 377

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELAC---QYSWGIFVLLMMFICLSLTVLYSVRLTYLSF 139
Cdd:PRK06589 378 SFIISISSLSLIGIPIFSGFISKFLILLAASeqnQPWLSIIVMLVVIASSILSALYLLKILSSIY 442
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 5-142 8.73e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 8.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMfsisLGLYEL-------AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLV 77
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVL----LGIFALnplglqgAVLQMVSHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVL 372

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMmfICLSLTVLYSVRLTYLSFVGP 142
Cdd:COG1008  373 AALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAA--LGLILTAAYLLWMYQRVFFGP 435
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 3-144 1.33e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 56.66  E-value: 1.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISL----GLYEL----------AFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFG 68
Cdd:PRK08667 291 EHDLKGLLAYSSIENIGIILMGIGLyvifGVYGLdtlallalggALFHSLNHALFKSLLFLTAGSVVHATG-TRNIEKMG 369

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116089515  69 GLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLL--MMFICLSLTVLYSVrLTYLSFVGPYG 144
Cdd:PRK08667 370 GLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSVADPLIkiLLFSVLAIFALTSA-LAAACFVKAFG 446
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 5-127 3.28e-09

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 55.69  E-value: 3.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAgNTQDIRSFGGLSLNFPLVTVCMNLA 84
Cdd:PRK07390 307 DIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILTT-ITQDLTELGGLWSRMPATTLAFLVG 385

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 116089515  85 NLSLCGVPFLAGFYS-KDLIVELACQYSW--GIFVLLMMFICLSLT 127
Cdd:PRK07390 386 SAGLVALLPLGGFWAlLRLADGLWAVSPWlvGVLLLVNALTAFNLT 431
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 3-103 4.10e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 55.28  E-value: 4.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLGLYELA--------------FFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFG 68
Cdd:PRK06521 297 EHDLKRLLAYSTIENIGIIFVGLGLAMVFIAygmpllaalaltaaLYHLLNHALFKSLLFLGAGAVLHATG-TRDMEKLG 375

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 116089515  69 GLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLI 103
Cdd:PRK06521 376 GLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLL 410
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
3-147 7.66e-08

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 51.49  E-value: 7.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLGLY---ELAFFHLLTHALFKALLFLCAGILIHGAGNTQdIRSFGGLSLNFPLVTV 79
Cdd:PRK12663 293 YKDIRRIAGYQVISSIGFILLGLALGTPagiNGAIFYLVHDMVVKTALFLIAGSLVRLTGYRS-LQYLGGLYRKEPLFGA 371

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116089515  80 CMNLANLSLCGVPFLAGFYSKDLIVELACQYswGIFVLLMMFICLSLTVLYSV-RLTYLSFVGPYGGGA 147
Cdd:PRK12663 372 LFLILIFAIGGLPPFSGFWGKVLLVQGALDN--GAYILLALMLITSLITMYSLfRIFFLAYWGDKDGEE 438
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 5-100 1.20e-07

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 50.89  E-value: 1.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:COG1007  292 NVKRMLAYSSIAHAGYLLLGLAAGTplgVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPLLALAM 371

                         90
                 ....*....|....*....
gi 116089515  82 NLANLSLCGVPFLAGFYSK 100
Cdd:COG1007  372 TIFLLSLAGIPPTAGFFGK 390
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
5-142 1.50e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.42  E-value: 1.50e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGIlIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTplgIVAGIFHAINHVIYKSALFLGAGI-VSYRTKTSNLRKLGGLLPVMPVVAFMV 367

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116089515  82 NLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSlTVLYSVRLTYLSFVGP 142
Cdd:PRK06277 368 LCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIG-TFVSMMKAFYLIYLKP 427
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 130-199 2.14e-07

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 48.70  E-value: 2.14e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  130 YSVRLTYLSFVGPYGGGASISVCESDYSLVGPVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKWGALF 199
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALL 70
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 1-97 4.54e-07

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 49.44  E-value: 4.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYELA--------------FFHLLTHALFKALLFLCAGILIHGAGNtQDIRS 66
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLGAGSVWFRTGH-RDIEK 342

                         90       100       110
                 ....*....|....*....|....*....|.
gi 116089515  67 FGGLSLNFPLVTVCMNLANLSLCGVPFLAGF 97
Cdd:PRK08042 343 LGGIGKKMPVISIAMLVGLMAMAALPPLNGF 373
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-52 4.92e-07

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 48.93  E-value: 4.92e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 116089515  10 IALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAG 52
Cdd:PRK08168 291 LAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSAS 333
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-100 1.08e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.19  E-value: 1.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSISLGLYE---LAFFHLLTHALFKALLFLCAGILIHGAGNTqDIRSFGGLSLNFPLV 77
Cdd:PRK12662 298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISYHFGTT-KLEDCLNLWKSMPKI 376

                         90       100
                 ....*....|....*....|...
gi 116089515  78 TVCMNLANLSLCGVPFLAGFYSK 100
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAK 399
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 5-126 3.63e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.46  E-value: 3.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGlYELAFF----HLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPLVTVC 80
Cdd:PRK06458 304 DIKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQKYG-TRDINVIRGLLKVSPLTGWG 381

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 116089515  81 MNLANLSLCGVPFLAGFYSKDLIVELACQ-YSWGIFVLLMMFICLSL 126
Cdd:PRK06458 382 LMLGALAIAGMPPFGVFISEFLILTAGLArGPLLIAILLLLLLTLAF 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-104 4.32e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.35  E-value: 4.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   1 IFEYDLKKIIALSTLSQLGMMMFSI----SLGLyELAFFHLLTHALFKALLFLCAGILIHGAGnTQDIRSFGGLSLNFPL 76
Cdd:PRK05846 296 LAQTDIKKLIAYSSISHMGFVTLGIfagnQLGI-QGAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMPV 373

                         90       100
                 ....*....|....*....|....*...
gi 116089515  77 VTVCMNLANLSLCGVPFLAGFYSKDLIV 104
Cdd:PRK05846 374 LAAFFLFFAMASLGLPGTSGFVGEFLIL 401
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 5-52 1.14e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 45.03  E-value: 1.14e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAG 52
Cdd:PRK08601 289 DYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSG 336
ndhB CHL00049
NADH dehydrogenase subunit 2
 6-100 2.42e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 44.22  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   6 LKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALL----FLCAgILIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:CHL00049 304 MKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIFMnlgtFACI-VLFGLRTGTDNIRDYAGLYTKDPFLALSL 382

                         90
                 ....*....|....*....
gi 116089515  82 NLANLSLCGVPFLAGFYSK 100
Cdd:CHL00049 383 ALCLLSLGGIPPLAGFFGK 401
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 3-173 5.49e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 42.82  E-value: 5.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   3 EYDLKKIIALSTLSQLGMMMFSISLGLYELAF---FHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNfPLVTV 79
Cdd:PRK08676 294 QRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQ-PVAAW 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515  80 CMNLANLSLCGVPFLAGFYSK-DLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTylsFVGPYGGGASISVCESDYSL 158
Cdd:PRK08676 373 GVILGSAAIIGMPPFPLFLSKfFILLQLGGISVWLVLAVLLLLLLAASSFAIFLLKA---FTRVSEGNADRPVFRTPLSM 449

                        170
                 ....*....|....*
gi 116089515 159 VGPVVILSFTSLVSG 173
Cdd:PRK08676 450 KLPIVIILALVLALG 464
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-132 5.91e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.03  E-value: 5.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGiLIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:PRK12665 296 DIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLF 374

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 116089515  82 NLANLSLCGVPFLAGFYSKDLIVELACQY-SWGIFVLLMMFICLSLTVLYSV 132
Cdd:PRK12665 375 FVPALNLGGIPPFSGFIGKVALLEAGAEDgTWLAWALVAGGVVTSLLTLYAV 426
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
5-100 6.69e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 42.50  E-value: 6.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   5 DLKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCM 81
Cdd:PRK05777 293 NIKRLLAYSSIAHAGYLLVGLAAGTaegYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVM 372

                         90
                 ....*....|....*....
gi 116089515  82 NLANLSLCGVPFLAGFYSK 100
Cdd:PRK05777 373 TIFMLSLAGIPPTAGFWGK 391
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
6-100 2.07e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 41.19  E-value: 2.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   6 LKKIIALSTLSQLGMMMFSISLGL---YELAFFHLLTHALFKALLFLCAgILIHGAGNTQDIRSFGGLSLNFPLVTVCMN 82
Cdd:PRK02504 300 MKRMLAYSSIGQAGFVMIGLVAGTeagYASMVFYLLAYLFMNLGAFACV-ILFSLRTGTDQISDYAGLYQKDPLLTLGLS 378

                         90
                 ....*....|....*...
gi 116089515  83 LANLSLCGVPFLAGFYSK 100
Cdd:PRK02504 379 LCLLSLGGIPPLAGFFGK 396
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 6-134 4.85e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 36.93  E-value: 4.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089515   6 LKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLAN 85
Cdd:MTH00196 176 IKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFSGLSRRLPILAITLALTF 255

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 116089515  86 LSLCGVPFLAGFYSKDLIVELACQYSWgIFVLLMMFICLSLTVLYSVRL 134
Cdd:MTH00196 256 LSIAGIPPLVGFLGKWLILLSGVVYQY-YLIFLLAVFCSVIAGVYYVRI 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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