NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|142886722|gb|ABO92868|]
View 

NADH dehydrogenase subunit 5, partial (mitochondrion) [Metator pardalinus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-204 4.02e-67

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 215.39  E-value: 4.02e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 142886722 161 LGYLISDFDYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYP 511
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-204 4.02e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 215.39  E-value: 4.02e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 142886722 161 LGYLISDFDYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYP 511
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-204 1.49e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 92.23  E-value: 1.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   84 YSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 142886722  164 LISDFdYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:pfam06455  81 ELSNL-SNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLS 120
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.41e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.97  E-value: 1.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWLNFLIFFMYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  80 LTASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWL---------IFPIPYVIVLPWYLKLL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886722 151 TLSVVIMGSYLGYLI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-204 4.02e-67

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 215.39  E-value: 4.02e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00165 308 LFLCAGSIIHNMSNSQDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00165 388 TVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGW 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 142886722 161 LGYLISDFDYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:MTH00165 468 LGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYP 511
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-203 4.61e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 151.34  E-value: 4.61e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00209 304 LFICAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSL 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00209 384 TAAYSMRLSYFSLWGPNSSKSLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVL 463

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886722 161 LGYLISDFDYFYSLFSLSFLSFasfvGSMWFMPFIS*NYVSYL 203
Cdd:MTH00209 464 LMYMVLKKNFFLIKGYKVNYFL----SQMWFLPDLSSQPVNKF 502
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-204 7.60e-40

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 142.98  E-value: 7.60e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00207 308 LFVCAGSLIHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATAL 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00207 388 TAAYSTRFTLAVLWSPNSSSPYHHLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGAL 467

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 142886722 161 LGYLISDFDYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:MTH00207 468 LAWLFTTPNITKTPLLINNPLSHFASCLMWFLVPLSSQFIMSTP 511
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-203 4.25e-37

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 135.36  E-value: 4.25e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00151 305 LFLCAGSIIHSSSGTQDIRLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGL 384

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00151 385 TALYSARLSFCLVWGSMKSSSLSSKSDEDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLF 464

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 142886722 161 LGYLISDfdyfYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYL 203
Cdd:MTH00151 465 LSFGFWD----SGFSSSKMVKLSFFFSSMWFLSPLSSQPLKSL 503
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-158 2.73e-35

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 130.36  E-value: 2.73e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00108 339 LFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFP--IPyVIVLPWYLKLLTLSVVIMG 158
Cdd:MTH00108 419 TAAYSTRIIFFALLGQPRFPPLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPttIP-QMTMPLYLKLTALAVTILG 497
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-162 2.93e-35

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 130.28  E-value: 2.93e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00004 338 LFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSF 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPI-PYVIVLPWYLKLLTLSVVIMGS 159
Cdd:MTH00004 418 TAAYSLRMILLVQTGFPRTPPTTPINENTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILGI 497


                 ...
gi 142886722 160 YLG 162
Cdd:MTH00004 498 LLA 500
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-166 2.61e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 122.32  E-value: 2.61e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSF 415

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPI-PYVIVLPWYLKLLTLSVVIMGS 159
Cdd:MTH00066 416 TAVYSFRIIYFSSMKFPRSLPLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMkPQILTMPTFMKLAALLVTLLGL 495


                 ....*..
gi 142886722 160 YLGYLIS 166
Cdd:MTH00066 496 LIALDLA 502
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-166 3.32e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 121.98  E-value: 3.32e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00211 333 LFMCSGSIIHGLNNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIV-LPWYLKLLTLSVVIMGS 159
Cdd:MTH00211 413 TAAYSFRLIFLSLGGYPRFLSLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGL 492


                 ....*..
gi 142886722 160 YLGYLIS 166
Cdd:MTH00211 493 LLGLELV 499
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 1-165 1.10e-31

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 120.46  E-value: 1.10e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00208 365 LFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLL 444

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPyVIVLPWYLKLLTLSVVIMGSY 160
Cdd:MTH00208 445 TAVYSFRIIFFCFLNNPSFSPLSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAA 523


                 ....*
gi 142886722 161 LGYLI 165
Cdd:MTH00208 524 FSFSF 528
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-158 8.68e-28

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 109.54  E-value: 8.68e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00137 344 LFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSF 423

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPI--PyVIVLPWYLKLLTLSVVIMG 158
Cdd:MTH00137 424 TAVYSLRVVFFVSMGHPRFNPLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPLktP-VMTMPPLLKLAALIVTILG 502
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 84-204 1.49e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 92.23  E-value: 1.49e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   84 YSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMGSYLGY 163
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 142886722  164 LISDFdYFYSLFSLSFLSFASFVGSMWFMPFIS*NYVSYLP 204
Cdd:pfam06455  81 ELSNL-SNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLS 120
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 1-165 2.84e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 87.76  E-value: 2.84e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00210 340 LFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALL 419

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFK--DNNYFISFGMIGLLFVAVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIMG 158
Cdd:MTH00210 420 TAFYSIRLIYLTFITNTNSKKEVFIGvhESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLG 499


                 ....*..
gi 142886722 159 SYLGYLI 165
Cdd:MTH00210 500 ALLAFVI 506
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-165 1.41e-19

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 85.97  E-value: 1.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILE-VVCLSWLNFLIFFMYFISTG 79
Cdd:COG1009  340 LFLGAGSVIHAT-GTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAF 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  80 LTASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIGLLFVAVFGGSLLSWL---------IFPIPYVIVLPWYLKLL 150
Cdd:COG1009  419 LTAFYSFRLFFLVFFGKPRPKTPKHPHESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNAL 498

                        170
                 ....*....|....*
gi 142886722 151 TLSVVIMGSYLGYLI 165
Cdd:COG1009  499 PLLLSLLGIALGYLL 513
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-165 4.17e-19

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 84.44  E-value: 4.17e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVcLSWLNFLIFFMYFISTGL 80
Cdd:PRK06590 346 LFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAA-FANGHINLFVAGLVGAFL 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNnfypsyyfKDNNY-------FISFGMIGLLFVAVFGG-----SLLSWLIFPIPYVIV-----L 143
Cdd:PRK06590 425 TAFYSFRLIFLVFHGKE--------KEKIHhphespaVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELAHGeaehhL 496

                        170       180
                 ....*....|....*....|..
gi 142886722 144 PWYLKLLTLSVVIMGSYLGYLI 165
Cdd:PRK06590 497 PVWVALLPLVVALAGIALAWLL 518
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 1-165 2.50e-18

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 82.43  E-value: 2.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00020 339 LFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALL 418

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYF--KDNNYFISFGMIGLLFVAVFGGSLLSWLI--FPIPYVIVLPWYLKLLTLSVVI 156
Cdd:MTH00020 419 TAFYSIRLIYLTFLSNTNLKKAVFFhlHEGDWNLLLPLGILALGSIFVGYLAKEMIwsFQITLPPIVPLSIKLLPVFLSL 498


                 ....*....
gi 142886722 157 MGSYLGYLI 165
Cdd:MTH00020 499 GGIGLVIIL 507
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
1-96 1.72e-14

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 71.21  E-value: 1.72e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKD--------SQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSwlNFLIFF 72
Cdd:PRK07376 356 LFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWF 433

                         90       100
                 ....*....|....*....|....
gi 142886722  73 MYFISTGLTASYSFRLFYYSMMGD 96
Cdd:PRK07376 434 VGFLTAGMTAFYMFRMYFLTFEGE 457
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-118 1.50e-10

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 59.52  E-value: 1.50e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNL--------KDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVvclSWLNFLIF- 71
Cdd:CHL00025 356 LFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILND---SWLYSPIFa 432

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 142886722  72 FMYFISTGLTASYSFRLFYYSMMGDNNFY-PSYYFKDNNYFISFGMIG 118
Cdd:CHL00025 433 IIAWSTAGLTAFYMFRIYLLTFEGHLRVHfQNYSGKKNSSFYSISLWG 480
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-77 2.05e-10

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 58.48  E-value: 2.05e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886722    1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFIS 77
Cdd:pfam00361 215 LFLCAGSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 1-60 1.85e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 56.51  E-value: 1.85e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 142886722   1 LFMCAGSMIHNLK-DSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEV 60
Cdd:MTH00032 355 LFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLILEL 415
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-91 2.30e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 50.15  E-value: 2.30e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVcLSWLNFLIFFMYFISTGL 80
Cdd:COG0651  340 LFLAAGAIERATG-TRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAA-LEAGAWLLAAVLLLSSLL 417

                         90
                 ....*....|.
gi 142886722  81 TASYSFRLFYY 91
Cdd:COG0651  418 TLAYFVRIFGR 428
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 1-157 3.87e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 43.37  E-value: 3.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLSWLNFLIFFMYFISTGL 80
Cdd:MTH00095 292 LFMQVGYLIHSNFGQQDGRNYSNNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFL 371

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 142886722  81 TASYSFRLFYYSMMGDNNFYPSYYFKDNNYFISFGMIgllfvaVFGGSLLSWLIFPIPYVIVLPWYLKLLTLSVVIM 157
Cdd:MTH00095 372 TFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLMLV------FFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLF 442
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-59 9.75e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.33  E-value: 9.75e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886722   1 LFMCAGSMIHNLKDsQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK08667 349 LFLTAGSVVHATGT-RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYE 406
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-124 1.16e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.03  E-value: 1.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSmIHNLKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLS---WLNFLIFFMYFIS 77
Cdd:PRK06589 348 LFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQnqpWLSIIVMLVVIAS 426

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 142886722  78 TGLTASYSFRLFYysmmgdNNFYPSYyfkDNNYFISFGMIGLLFVAV 124
Cdd:PRK06589 427 SILSALYLLKILS------SIYKPSL---SENSFITKSLPYLMQISV 464
PRK12650 PRK12650
DUF4040 family protein;
1-59 1.35e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 1.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886722   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12650 340 LFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLT 397
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-95 1.43e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 38.91  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILevvcLSWLNFLIFFMYFISTG- 79
Cdd:COG1008  343 LFLLVGVLYDRTH-TRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL----LGAFQVNPWLAILAALGl 417

                         90
                 ....*....|....*..
gi 142886722  80 -LTASYSFRLFYYSMMG 95
Cdd:COG1008  418 iLTAAYLLWMYQRVFFG 434
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-95 1.74e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 38.71  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSK-DLILEVVCLSWLNFLIFFMyfISTG 79
Cdd:PRK08375 339 LFLAAGAIEVTYG-TRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKwYLVVGAVEAGQWLVLAVLL--ASSL 415

                         90
                 ....*....|....*.
gi 142886722  80 LTASYSFRLFYYSMMG 95
Cdd:PRK08375 416 LALLYFLRIWYRAFFG 431
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 1-87 2.23e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 38.25  E-value: 2.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDL----ILEVVCLSWLNFLIFFMYFI 76
Cdd:PRK12648 339 LFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMffaeTLDTHLLGSLDWLLPVAATL 417

                         90
                 ....*....|.
gi 142886722  77 STGLTASYSFR 87
Cdd:PRK12648 418 AGAFSVAYSLR 428
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-96 4.35e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.49  E-value: 4.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLKdSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILevvcLSWLNFLIFFMYFISTG- 79
Cdd:PRK05846 345 LFLLVGVLYDRLH-TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLIL----LGSFQVNPVIAFIATTGl 419

                         90
                 ....*....|....*...
gi 142886722  80 -LTASYSFRLFYYSMMGD 96
Cdd:PRK05846 420 iLAAVYSLWLYQRVMFGP 437
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-134 6.87e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 36.61  E-value: 6.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 142886722   1 LFMCAGSMIHNLkDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILEVVCLswLNFLIFFMYFISTGL 80
Cdd:PRK08376 367 LFLTAGAVIYET-GTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVL 443

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 142886722  81 TASYSFRLFYYSMMGDNNfyPSYY-FKDNNYFISFGMIgLLFVAVFGGSLLSWLI 134
Cdd:PRK08376 444 TLASFVKVFHTAFFGPPS--EKVMnVKEPPKPMLVPML-ILAIAIIGMGLFPWQI 495
PRK12646 PRK12646
DUF4040 family protein;
1-59 7.77e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 36.66  E-value: 7.77e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 142886722   1 LFMCAGSMIHNlKDSQDIRFMGSIVNFMP*SSVCLNVSSLSLCGMPFLAGFYSKDLILE 59
Cdd:PRK12646 356 LFMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLD 413
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH