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Conserved domains on  [gi|157367434|gb|ABV45569|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Mammuthus primigenius]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 17-115 4.77e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.77e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00106  17 LVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLIS 96

                         90
                 ....*....|....*....
gi 157367434  97 LLAIGLAYEWLQKGLEWTK 115
Cdd:MTH00106  97 LLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 17-115 4.77e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.77e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00106  17 LVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLIS 96

                         90
                 ....*....|....*....
gi 157367434  97 LLAIGLAYEWLQKGLEWTK 115
Cdd:MTH00106  97 LLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.61e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434   18 VLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFML-II 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 157367434   97 LLAIGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 17-113 1.34e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.18  E-value: 1.34e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFML-I 95
Cdd:COG0838   22 MLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIEMLVfI 99

                         90
                 ....*....|....*...
gi 157367434  96 ILLAIGLAYEWLQKGLEW 113
Cdd:COG0838  100 AILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 17-115 4.77e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 187.45  E-value: 4.77e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00106  17 LVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLIS 96

                         90
                 ....*....|....*....
gi 157367434  97 LLAIGLAYEWLQKGLEWTK 115
Cdd:MTH00106  97 LLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 17-113 5.68e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 146.60  E-value: 5.68e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00136  18 LAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLI 97

                         90
                 ....*....|....*..
gi 157367434  97 LLAIGLAYEWLQKGLEW 113
Cdd:MTH00136  98 LLTLGLIYEWLQGGLEW 114
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 17-113 8.35e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 141.28  E-value: 8.35e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00069  16 LITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWSTLILI 95

                         90
                 ....*....|....*..
gi 157367434  97 LLAIGLAYEWLQKGLEW 113
Cdd:MTH00069  96 LLTLGLIYEWIQGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 17-114 1.28e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 138.09  E-value: 1.28e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00113  17 LTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILT 96

                         90
                 ....*....|....*...
gi 157367434  97 LLAIGLAYEWLQKGLEWT 114
Cdd:MTH00113  97 LLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 17-113 2.15e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 120.09  E-value: 2.15e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLII 96
Cdd:MTH00042  18 LLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLI 97

                         90
                 ....*....|....*..
gi 157367434  97 LLAIGLAYEWLQKGLEW 113
Cdd:MTH00042  98 ILTIGLVYEWVNGGLEW 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 17-113 5.43e-33

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 111.14  E-value: 5.43e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFmlII 96
Cdd:MTH00203  18 LLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLLAFLF--LI 95

                         90
                 ....*....|....*..
gi 157367434  97 LLAIGLAYEWLQKGLEW 113
Cdd:MTH00203  96 LLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.61e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.61e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434   18 VLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFML-II 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGFVEMLIfIA 78

                          90
                  ....*....|....*.
gi 157367434   97 LLAIGLAYEWLQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 17-115 3.88e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 101.47  E-value: 3.88e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTY-SEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLI 95
Cdd:MTH00148  18 LLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSFSVWSLTSLFIFL 97

                         90       100
                 ....*....|....*....|
gi 157367434  96 ILLAIGLAYEWLQKGLEWTK 115
Cdd:MTH00148  98 LILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 32-113 2.85e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 96.77  E-value: 2.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLIILLAIGLAYEWLQKGL 111
Cdd:MTH00161  32 EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLYYEWNQGAL 111


                 ..
gi 157367434 112 EW 113
Cdd:MTH00161 112 EW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 32-115 4.62e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 93.90  E-value: 4.62e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLIILLAIGLAYEWLQKGL 111
Cdd:MTH00202  34 EKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSL 113


                 ....
gi 157367434 112 EWTK 115
Cdd:MTH00202 114 DWVK 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 17-113 1.34e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 90.18  E-value: 1.34e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFML-I 95
Cdd:COG0838   22 MLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIEMLVfI 99

                         90
                 ....*....|....*...
gi 157367434  96 ILLAIGLAYEWLQKGLEW 113
Cdd:COG0838  100 AILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 1.36e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.61  E-value: 1.36e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLIILLAIGLAYEWLQKGL 111
Cdd:MTH00012  34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                 ...
gi 157367434 112 EWT 114
Cdd:MTH00012 114 DWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 31-113 8.44e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 85.53  E-value: 8.44e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  31 SEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNL--TLLMSFMLIIlLAIGLAYEWLQ 108
Cdd:MTH00055  36 SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIGLfgFWVMYLFLII-LTIGLIYEWVK 112


                 ....*
gi 157367434 109 KGLEW 113
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 6.94e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 80.75  E-value: 6.94e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  31 SEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNL-TLLMSFMLIILLAIGLAYEWLQK 109
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLNLfSFWIVYTFLIVLAIGLAYEWIKG 118


                 ....
gi 157367434 110 GLEW 113
Cdd:MTH00030 119 GLEW 122
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 17-114 1.89e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 79.52  E-value: 1.89e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFMLII 96
Cdd:PRK06602  25 LLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLGFVEAMIFI 102

                         90
                 ....*....|....*....
gi 157367434  97 L-LAIGLAYEWLQKGLEWT 114
Cdd:PRK06602 103 LvLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-113 4.22e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 75.87  E-value: 4.22e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNLTLLMSFML-IILLAIGLAYEWLQKG 110
Cdd:MTH00018  32 EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIAPFGFWTMVGfLFILTLGLIYEWIKGG 109


                 ...
gi 157367434 111 LEW 113
Cdd:MTH00018 110 LEW 112
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 3.32e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 55.90  E-value: 3.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAIQANNTNLTLLMS-FMLIILLAIGLAYEWLQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLFALIEmLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 157367434 111 LEW 113
Cdd:PRK07756 119 LQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 32-114 7.33e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.99  E-value: 7.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  32 EKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNL-TLLMSFMLIILLAIGLAYEWLQKG 110
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVsAFIEALIFVLILIVGLVYAWRKGA 116


                 ....
gi 157367434 111 LEWT 114
Cdd:CHL00022 117 LEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 1.81e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.91  E-value: 1.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  33 KTSPYECGFDPMGSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAIQANNTNLTLLMSFMLIIL-LAIGLAYEWLQK 109
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMALFMLtVFVAYAYVWRRG 114


                 ....*
gi 157367434 110 GLEWT 114
Cdd:PRK07928 115 GLEWD 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 2.78e-08

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 48.51  E-value: 2.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  33 KTSPYECGFDPMGSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAIQANNTNL-TLLMSFMLIILLAIGLAYEWLQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLfGLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 157367434 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 17-114 1.59e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.34  E-value: 1.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157367434  17 MVLIAFWLPQTYTYSEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLpwaiqANNTNLTLLMSFMLII 96
Cdd:MTH00092  18 LYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL-----LVSDFSSLISFFMLMI 92

                         90
                 ....*....|....*...
gi 157367434  97 LLAIGLAYEWLQKGLEWT 114
Cdd:MTH00092  93 FIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 2.78e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.57  E-value: 2.78e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 157367434  35 SPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-100 2.06e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 35.35  E-value: 2.06e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157367434  33 KTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQANNTNLTLLMSFMLIILLAI 100
Cdd:PRK06073  40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVVALVLMYPV 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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