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Conserved domains on  [gi|161138254|gb|ABX58079|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Bryobrittonia longipes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 8-40 8.96e-06

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member PRK06590:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 624  Bit Score: 41.30  E-value: 8.96e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 161138254   8 RKLAKQISKLQSGFVYHYAFVMLIGLTIFITII 40
Cdd:PRK06590 586 GGGSRVLRRLQTGYLRHYAASMLIGAVVLLALL 618
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 8-40 8.96e-06

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 41.30  E-value: 8.96e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 161138254   8 RKLAKQISKLQSGFVYHYAFVMLIGLTIFITII 40
Cdd:PRK06590 586 GGGSRVLRRLQTGYLRHYAASMLIGAVVLLALL 618
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-39 5.41e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.98  E-value: 5.41e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 161138254   2 GISYTFRKLAKQISKLQSGFVYHYAFVMLIGLTIFITI 39
Cdd:COG1009  571 GLARLTLFSGRLLRRLQTGYLQFYALTILLGVVVLLLL 608
 
Name Accession Description Interval E-value
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 8-40 8.96e-06

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 41.30  E-value: 8.96e-06
                         10        20        30
                 ....*....|....*....|....*....|...
gi 161138254   8 RKLAKQISKLQSGFVYHYAFVMLIGLTIFITII 40
Cdd:PRK06590 586 GGGSRVLRRLQTGYLRHYAASMLIGAVVLLALL 618
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-42 3.84e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 39.61  E-value: 3.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 161138254   2 GISYTFRKLAKQISKLQSGFVYHYAFVMLIGLTIFITIIGL 42
Cdd:MTH00210 575 GISKVLIKLTQKISNLQSGMVFNYALIMIIFTTLFISGAGI 615
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 2-39 5.41e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.98  E-value: 5.41e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 161138254   2 GISYTFRKLAKQISKLQSGFVYHYAFVMLIGLTIFITI 39
Cdd:COG1009  571 GLARLTLFSGRLLRRLQTGYLQFYALTILLGVVVLLLL 608
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 2-40 5.69e-05

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 5.69e-05
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 161138254   2 GISYTFRKLAKQISKLQSGFVYHYAFVMLIGLTIFITII 40
Cdd:MTH00020 572 GISNFLIILTQGLSSLQSGLVFNYALVILIGVAIFIWGL 610
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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