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Conserved domains on  [gi|226859329|gb|ACO88204|]
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cytochrome oxidase subunit 3, partial (mitochondrion) [Mytilus edulis]

Protein Classification

cytochrome c oxidase subunit 3 family protein( domain architecture ID 201)

cytochrome c oxidase (CcO) subunit 3 family protein is not required for catalytic activity but may play a role in the assembly of the heme-copper oxidase (such as CcO and cytochrome bo(3) ubiquinol oxidase) multimer complex

CATH:  1.20.120.80
Gene Ontology:  GO:0070069|GO:0009055
PubMed:  8083153|12907296
SCOP:  3000671

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Heme_Cu_Oxidase_III_like super family cl00211
Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in ...
1-72 2.29e-34

Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria.


The actual alignment was detected with superfamily member cd01665:

Pssm-ID: 444752  Cd Length: 243  Bit Score: 118.77  E-value: 2.29e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd01665  172 ISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW 243
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_III cd01665
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
1-72 2.29e-34

Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.


Pssm-ID: 238834  Cd Length: 243  Bit Score: 118.77  E-value: 2.29e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd01665  172 ISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW 243
COX3 MTH00141
cytochrome c oxidase subunit III; Provisional
1-72 1.06e-33

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177199  Cd Length: 259  Bit Score: 117.68  E-value: 1.06e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00141 186 IADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVVWLFLYLSIYWW 257
CyoC COG1845
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];
1-72 8.79e-27

Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];


Pssm-ID: 441450  Cd Length: 192  Bit Score: 98.00  E-value: 8.79e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:COG1845  121 PTSNAFGSFFFLLTGFHGLHVIIGLIWLLVVLVRALRGGFTPENHTGVEAAALYWHFVDVVWIFLFALVYLL 192
COX3 pfam00510
Cytochrome c oxidase subunit III;
1-72 1.71e-24

Cytochrome c oxidase subunit III;


Pssm-ID: 395410  Cd Length: 258  Bit Score: 93.63  E-value: 1.71e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329    1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:pfam00510 185 ISDGVYGSTFYFATGFHGLHVIIGTAFLAVCFLRLLKYHLTDNHHFGFEAAILYWHFVDVVWLFLYVSVYWW 256
QoxC TIGR02897
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the ...
4-71 7.62e-06

cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131943  Cd Length: 190  Bit Score: 42.92  E-value: 7.62e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226859329    4 SVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYV 71
Cdd:TIGR02897 119 GSYWSSFFVLLGTHGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYL 186
 
Name Accession Description Interval E-value
Cyt_c_Oxidase_III cd01665
Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
1-72 2.29e-34

Cytochrome c oxidase subunit III. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. CcO catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit III contains bound phospholipids in several crystal structures and is proposed to contain a "lipid pool." These phospholipids are believed to intrinsic constituents similar to cofactors of the enzyme.


Pssm-ID: 238834  Cd Length: 243  Bit Score: 118.77  E-value: 2.29e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd01665  172 ISDSVYGSTFFMLTGFHGLHVIIGTIFLTVCLIRLLKGHFSSNHHLGFEAAIWYWHFVDVVWLFLFVFVYWW 243
COX3 MTH00141
cytochrome c oxidase subunit III; Provisional
1-72 1.06e-33

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177199  Cd Length: 259  Bit Score: 117.68  E-value: 1.06e-33
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00141 186 IADGVYGSTFFVLTGFHGLHVIIGTTFLLVCLVRLLLGHFSTNHHFGFEAAAWYWHFVDVVWLFLYLSIYWW 257
COX3 MTH00155
cytochrome c oxidase subunit III; Provisional
1-70 8.78e-30

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 214439  Cd Length: 255  Bit Score: 107.19  E-value: 8.78e-30
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVY 70
Cdd:MTH00155 186 IADSVYGSTFFMATGFHGLHVIIGTTFLLVCLIRHLNNHFSSNHHFGFEAAAWYWHFVDVVWLFLYISIY 255
Heme_Cu_Oxidase_III_like cd00386
Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in ...
1-72 3.68e-29

Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria.


Pssm-ID: 238227  Cd Length: 183  Bit Score: 103.82  E-value: 3.68e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd00386  112 ISDSVFGSTFFLLTGFHGLHVIIGLIFLLVVLIRLRRGHFTPRHHLGLEAAALYWHFVDVVWLFLFPLVYLW 183
COX3 MTH00189
cytochrome c oxidase subunit III; Provisional
1-72 1.01e-28

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177238  Cd Length: 260  Bit Score: 104.67  E-value: 1.01e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00189 187 IADSVYGSTFFVATGFHGLHVIIGSTFLLVCLLRQIQGHFTSSHHFGFEAAAWYWHFVDVVWLFLYVSIYWW 258
COX3 MTH00118
cytochrome c oxidase subunit III; Provisional
1-72 7.75e-27

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177179  Cd Length: 261  Bit Score: 99.64  E-value: 7.75e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00118 188 ISDSVYGSTFFVATGFHGLHVIIGSTFLIVCLLRLIKFHFTTNHHFGFEAAAWYWHFVDVVWLFLYISIYWW 259
CyoC COG1845
Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];
1-72 8.79e-27

Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion];


Pssm-ID: 441450  Cd Length: 192  Bit Score: 98.00  E-value: 8.79e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:COG1845  121 PTSNAFGSFFFLLTGFHGLHVIIGLIWLLVVLVRALRGGFTPENHTGVEAAALYWHFVDVVWIFLFALVYLL 192
COX3 MTH00039
cytochrome c oxidase subunit III; Validated
1-72 4.39e-25

cytochrome c oxidase subunit III; Validated


Pssm-ID: 177114  Cd Length: 260  Bit Score: 95.18  E-value: 4.39e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00039 187 IADSVYGSTFFVATGFHGLHVIIGTTFLAVCLFRLINHHFSNNHHFGFEAAAWYWHFVDVVWLFLYVCIYWW 258
COX3 pfam00510
Cytochrome c oxidase subunit III;
1-72 1.71e-24

Cytochrome c oxidase subunit III;


Pssm-ID: 395410  Cd Length: 258  Bit Score: 93.63  E-value: 1.71e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329    1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:pfam00510 185 ISDGVYGSTFYFATGFHGLHVIIGTAFLAVCFLRLLKYHLTDNHHFGFEAAILYWHFVDVVWLFLYVSVYWW 256
COX3 MTH00024
cytochrome c oxidase subunit III; Validated
1-72 2.38e-23

cytochrome c oxidase subunit III; Validated


Pssm-ID: 214403  Cd Length: 261  Bit Score: 90.58  E-value: 2.38e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00024 188 ISDSVYGSTFFVATGFHGLHVIIGTTFLFVCLLRLLSNQFTRRQHVGFEAASWYWHFVDVVWLFLYLCIYWW 259
COX3 MTH00130
cytochrome c oxidase subunit III; Provisional
1-72 4.31e-23

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177188  Cd Length: 261  Bit Score: 90.21  E-value: 4.31e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00130 188 IADGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYISIYWW 259
COX3 MTH00028
cytochrome c oxidase subunit III; Provisional
1-72 1.20e-22

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 214406  Cd Length: 297  Bit Score: 89.74  E-value: 1.20e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00028 224 ISDSVYGSTFFMLTGTHGLHVLVGTTFLIVCFIRLLSNQFTNSHHLGLEAAIWYWHFVDVVWLFLYVFVYWW 295
COX3 MTH00099
cytochrome c oxidase subunit III; Validated
1-72 2.87e-22

cytochrome c oxidase subunit III; Validated


Pssm-ID: 177161  Cd Length: 261  Bit Score: 87.86  E-value: 2.87e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00099 188 ISDGIYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWW 259
COX3 MTH00075
cytochrome c oxidase subunit III; Provisional
1-72 4.09e-22

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177146  Cd Length: 261  Bit Score: 87.49  E-value: 4.09e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00075 188 IADGVYGSTFFVATGFHGLHVIIGSLFLLVCLLRQINFHFTSQHHFGFEAAAWYWHFVDVVWLFLYVSIYWW 259
COX3 MTH00052
cytochrome c oxidase subunit III; Provisional
1-72 6.14e-22

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 164623  Cd Length: 262  Bit Score: 87.16  E-value: 6.14e-22
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00052 189 ISDSVYGSTFFVTTGAHGGHVLIGSSFLLVCLFRLINHQFTRHHHFGFEAAAWYWHFVDVVWLFLFIFMYWW 260
COX3 MTH00219
cytochrome c oxidase subunit III; Provisional
1-72 1.15e-21

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 214464  Cd Length: 262  Bit Score: 86.38  E-value: 1.15e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00219 189 ISDSVYGTTFFVATGFHGLHVIIGTIFLFVCFMRGLMLHFSKNHHFGFEAAAWYWHFVDVVWLFLYVSIYWW 260
COX3 MTH00009
cytochrome c oxidase subunit III; Validated
1-72 1.77e-21

cytochrome c oxidase subunit III; Validated


Pssm-ID: 177101  Cd Length: 259  Bit Score: 85.66  E-value: 1.77e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00009 186 IADSVYGSTFFVATGFHGLHVLIGSSFLFVCLLRTWSHHFSTGHHFGFEAAAWYWHFVDVVWIFLYLCIYWW 257
COX3 MTH00083
cytochrome c oxidase subunit III; Provisional
1-72 8.16e-18

cytochrome c oxidase subunit III; Provisional


Pssm-ID: 177150  Cd Length: 256  Bit Score: 76.15  E-value: 8.16e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:MTH00083 183 ISDSIYGSIFYLGTGFHGIHVLCGGLFLLFNLLRLLKSHFNYNHHLGLEFAILYWHFVDVVWLFLFVFVYWW 254
PLN02194 PLN02194
cytochrome-c oxidase
1-74 1.11e-17

cytochrome-c oxidase


Pssm-ID: 177845  Cd Length: 265  Bit Score: 75.86  E-value: 1.11e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVWFG 74
Cdd:PLN02194 191 ISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 264
NorE_like cd02862
NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include ...
1-71 4.79e-14

NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.


Pssm-ID: 239213  Cd Length: 186  Bit Score: 64.95  E-value: 4.79e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 226859329   1 IADSVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYV 71
Cdd:cd02862  115 PDAGLFFTLYFLLTGFHLLHVLIGLGILLWVAWRARRGRYSARDYEGVEAAALYWHMVDLVWIVLFPLLYL 185
Heme_Cu_Oxidase_III_2 cd02865
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein ...
5-72 5.23e-13

Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.


Pssm-ID: 239216  Cd Length: 184  Bit Score: 62.00  E-value: 5.23e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226859329   5 VYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd02865  117 PAGSFFYLLTGLHGLHVIGGLVALAIVLAGLIRGHYGPRRRLPVELCALYWHFLLLVWLVLLALLYGT 184
Ubiquinol_oxidase_III cd02863
Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the ...
4-70 2.53e-11

Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.


Pssm-ID: 239214  Cd Length: 186  Bit Score: 57.64  E-value: 2.53e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 226859329   4 SVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVY 70
Cdd:cd02863  117 SAFLSAFFTLVGTHGLHVTFGLIWILVMIIQLKKRGLTPDTARRLFCLSLFWHFLDIVWIFVFTVVY 183
Heme_Cu_Oxidase_III_1 cd02864
Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein ...
6-72 1.14e-10

Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.


Pssm-ID: 239215  Cd Length: 202  Bit Score: 55.97  E-value: 1.14e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 226859329   6 YGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFssQRHFGF---EACIWYWHFVDVVWVSLWFVVYVW 72
Cdd:cd02864  135 FGASFFMITGFHGTHVTIGVIYLIIIARKVWRGKY--QRIGRYeivEIAGLYWHFVDLVWVFIFAFFYLW 202
PRK10663 PRK10663
cytochrome o ubiquinol oxidase subunit III; Provisional
4-71 2.36e-07

cytochrome o ubiquinol oxidase subunit III; Provisional


Pssm-ID: 182628  Cd Length: 204  Bit Score: 47.08  E-value: 2.36e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226859329   4 SVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYV 71
Cdd:PRK10663 133 SGFLSAFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYL 200
QoxC TIGR02897
cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the ...
4-71 7.62e-06

cytochrome aa3 quinol oxidase, subunit III; This family (QoxC) encodes subunit III of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. [Energy metabolism, Electron transport]


Pssm-ID: 131943  Cd Length: 190  Bit Score: 42.92  E-value: 7.62e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 226859329    4 SVYGSVFYLLTGFHGAHVVVGTIWLMVSLARLWRGEFSSQRHFGFEACIWYWHFVDVVWVSLWFVVYV 71
Cdd:TIGR02897 119 GSYWSSFFVLLGTHGCHVTLGIVWAICLLIQIQRRGLTPYTAPKVFIVSLYWHFLDVVWVFIFTAVYL 186
COX3 MTH00049
cytochrome c oxidase subunit III; Validated
3-71 5.94e-04

cytochrome c oxidase subunit III; Validated


Pssm-ID: 177124  Cd Length: 215  Bit Score: 37.59  E-value: 5.94e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 226859329   3 DSVYGSVFYLLTGFHGAHVVVGTIWLMVslaRLWRGEFSSQRHFGfEACIWYWHFVDVVWVSLWFVVYV 71
Cdd:MTH00049 150 DSSYYASCFCTVGLHFSHVVLGVVGLST---LLLVGSSSFGVYRS-TVLTWYWHFVDYIWLLVYLIVYV 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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