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Conserved domains on  [gi|255685096|gb|ACU28037|]
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At1g74600-like protein, partial [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 3-181 2.70e-52

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 178.50  E-value: 2.70e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   3 SSLLTMYSKFGSIDDCCKAFSqINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVE 82
Cdd:PLN03077 528 NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  83 ESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL 162
Cdd:PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686

                        170
                 ....*....|....*....
gi 255685096 163 EPSDAGAYISLSNILAEVG 181
Cdd:PLN03077 687 DPNSVGYYILLCNLYADAG 705
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 3-181 2.70e-52

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 178.50  E-value: 2.70e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   3 SSLLTMYSKFGSIDDCCKAFSqINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVE 82
Cdd:PLN03077 528 NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  83 ESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL 162
Cdd:PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686

                        170
                 ....*....|....*....
gi 255685096 163 EPSDAGAYISLSNILAEVG 181
Cdd:PLN03077 687 DPNSVGYYILLCNLYADAG 705
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 28-77 8.06e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.07  E-value: 8.06e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 255685096   28 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSH 77
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 31-64 3.94e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.37  E-value: 3.94e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 255685096   31 IAWTALIASYAQHGKANEALQVYNLMKEKGFKPD 64
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-182 4.45e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  24 QINGPDLIAWTALIASYAQHGKANEALQVYNLMKEkgFKPDKVTFVGVL-SACSHGGLVEESYFHLNSMVKdygIEPEN- 101
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLgLAYLRLGRYEEALADYEQALE---LDPDDa 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096 102 RHYVCMVDALGRSGRLREAESFINN-MHIKP-DALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAE 179
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKaLELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156


                 ...
gi 255685096 180 VGE 182
Cdd:COG0457  157 LGR 159
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 3-181 2.70e-52

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 178.50  E-value: 2.70e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   3 SSLLTMYSKFGSIDDCCKAFSqINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVE 82
Cdd:PLN03077 528 NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  83 ESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL 162
Cdd:PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686

                        170
                 ....*....|....*....
gi 255685096 163 EPSDAGAYISLSNILAEVG 181
Cdd:PLN03077 687 DPNSVGYYILLCNLYADAG 705
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 3-181 5.46e-47

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 162.73  E-value: 5.46e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   3 SSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVE 82
Cdd:PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  83 ESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIEL 162
Cdd:PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523

                        170
                 ....*....|....*....
gi 255685096 163 EPSDAGAYISLSNILAEVG 181
Cdd:PLN03081 524 GPEKLNNYVVLLNLYNSSG 542
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 28-162 7.24e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 66.05  E-value: 7.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   28 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDyGIEPENRHYVCM 107
Cdd:PLN03218  577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSAL 655

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 255685096  108 VDALGRSGRLREAESFINNMH---IKPDALVWGTLLAACKIHGEvelgkvaAKKAIEL 162
Cdd:PLN03218  656 VDVAGHAGDLDKAFEILQDARkqgIKLGTVSYSSLMGACSNAKN-------WKKALEL 706
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 28-77 8.06e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.07  E-value: 8.06e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 255685096   28 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSH 77
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 1-147 1.20e-12

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 65.26  E-value: 1.20e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   1 VGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACshgGL 80
Cdd:PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---EL 300

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 255685096  81 VEESYF--HLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKpDALVWGTLLAACKIHG 147
Cdd:PLN03077 301 LGDERLgrEMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNG 368
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 25-150 6.22e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 60.28  E-value: 6.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   25 INGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVkDYGIEPENRHY 104
Cdd:PLN03218  432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTF 510

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 255685096  105 VCMVDALGRSGRLreAESF-----INNMHIKPDALVWGTLLAACKIHGEVE 150
Cdd:PLN03218  511 GALIDGCARAGQV--AKAFgaygiMRSKNVKPDRVVFNALISACGQSGAVD 559
PLN03077 PLN03077
Protein ECB2; Provisional
 1-80 6.52e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 57.17  E-value: 6.52e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   1 VGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACshGGL 80
Cdd:PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC--GGI 200
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 3-150 2.84e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.57  E-value: 2.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096    3 SSLLTMYSKFGSIDDCCKAFSQING----PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHG 78
Cdd:PLN03218  476 TTLISTCAKSGKVDAMFEVFHEMVNagveANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 255685096   79 GLVEESYFHLNSM-VKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMH---IKPDALVWGTLLAACKIHGEVE 150
Cdd:PLN03218  556 GAVDRAFDVLAEMkAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHeynIKGTPEVYTIAVNSCSQKGDWD 631
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 31-64 3.94e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 44.37  E-value: 3.94e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 255685096   31 IAWTALIASYAQHGKANEALQVYNLMKEKGFKPD 64
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 28-75 1.16e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.89  E-value: 1.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 255685096   28 PDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSAC 75
Cdd:pfam13812  13 LNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 146-182 1.74e-06

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 43.69  E-value: 1.74e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 255685096  146 HGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGE 182
Cdd:pfam20431   1 YSNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGR 37
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 31-61 5.03e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 5.03e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 255685096   31 IAWTALIASYAQHGKANEALQVYNLMKEKGF 61
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 5-150 7.05e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 45.25  E-value: 7.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   5 LLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEES 84
Cdd:PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 255685096  85 YfHLNSMVKDYGIEpENRHYVC-MVDALGRSGRLREAESFINNMhikPDALV--WGTLLAACKIHGEVE 150
Cdd:PLN03081 244 Q-QLHCCVLKTGVV-GDTFVSCaLIDMYSKCGDIEDARCVFDGM---PEKTTvaWNSMLAGYALHGYSE 307
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 33-152 5.16e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 42.94  E-value: 5.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096   33 WTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMvKDYGIEPENRHY-----VC- 106
Cdd:PLN03218  617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYsslmgACs 695

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 255685096  107 -----------------------------MVDALGRSGRLREAESFINNMH---IKPDALVWGTLLAACKIHGEVELG 152
Cdd:PLN03218  696 naknwkkalelyediksiklrptvstmnaLITALCEGNQLPKALEVLSEMKrlgLCPNTITYSILLVASERKDDADVG 773
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-182 4.45e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096  24 QINGPDLIAWTALIASYAQHGKANEALQVYNLMKEkgFKPDKVTFVGVL-SACSHGGLVEESYFHLNSMVKdygIEPEN- 101
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--LDPDDAEALYNLgLAYLRLGRYEEALADYEQALE---LDPDDa 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255685096 102 RHYVCMVDALGRSGRLREAESFINN-MHIKP-DALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAE 179
Cdd:COG0457   77 EALNNLGLALQALGRYEEALEDYDKaLELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156


                 ...
gi 255685096 180 VGE 182
Cdd:COG0457  157 LGR 159
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 109-182 2.50e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 37.67  E-value: 2.50e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 255685096 109 DALGRSGRLREAESFINN-MHIKPD-ALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGE 182
Cdd:COG3914  120 NLLLALGRLEEALAALRRaLALNPDfAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 104-133 3.33e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 33.97  E-value: 3.33e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 255685096  104 YVCMVDALGRSGRLREAESFINNMH---IKPDA 133
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKergIEPDV 35
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 110-182 6.56e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 35.71  E-value: 6.56e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 255685096 110 ALGRSGRLREAESFINN-MHIKPD-ALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILAEVGE 182
Cdd:COG5010   63 LYNKLGDFEESLALLEQaLQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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