PsbA, partial (chloroplast) [Calamagrostis arundinacea]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Photo_RC super family | cl08220 | D1, D2 subunits of photosystem II (PSII); M, L subunits of bacterial photosynthetic reaction ... |
1-25 | 6.82e-08 | ||
D1, D2 subunits of photosystem II (PSII); M, L subunits of bacterial photosynthetic reaction center; This protein superfamily contains the D1, D2 subunits of the photosystem II (PS II) and the M, L subunits of the bacterial photosynthetic reaction center (RC). These four proteins are highly homologous and share a common fold. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Bacterial photosynthetic reaction center (RC) complex is found in photosynthetic bacteria, such as purple bacteria and other proteobacteria species. It couples light-induced electron transfer to proton pumping across the membrane by reactions of a quinone molecule (QB) that binds two electrons and two protons at the active site. Protons are translocated from the bacterial cytoplasm to the periplasmic space, generating an electrochemical gradient of protons (the protonmotive force) that can be used to power reactions such as the synthesis of ATP. The actual alignment was detected with superfamily member PLN00056: Pssm-ID: 447584 Cd Length: 353 Bit Score: 44.73 E-value: 6.82e-08
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| Name | Accession | Description | Interval | E-value | ||
| PLN00056 | PLN00056 | photosystem Q(B) protein; Provisional |
1-25 | 6.82e-08 | ||
photosystem Q(B) protein; Provisional Pssm-ID: 177687 Cd Length: 353 Bit Score: 44.73 E-value: 6.82e-08
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| Photosystem-II_D1 | cd09289 | D1 subunit of photosystem II (PS II); Photosystem II (PS II), D2 subunit. PS II is a ... |
1-16 | 1.17e-06 | ||
D1 subunit of photosystem II (PS II); Photosystem II (PS II), D2 subunit. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Molecular dioxygen is released as a by-product. PS II can be described as containing two parts: the photochemical part and the catalytic part. The photochemical portion promotes the fast, efficient light-induced charge separation and stabilization that occur when light is absorbed by chlorophyll. The catalytic portion, where water is oxidized, involves a cluster of Mn ions close to a redox-active tyrosine residue. The Mn cluster and its ligands form a functional unit called the oxygen-evolving complex (OEC) or the water-oxidizing complex (WOC). The D1 and D2 subunits are a pair of interwined polypeptides. They contain all the cofactors involved directly in water oxidation and plastoquinone reduction. The D1 subunit contains the Mn cluster that constitutes the site of water oxidation. D1 and D2 are highly homologous and are also similar to the L and M proteins in bacterial photosynthetic reaction centers. Pssm-ID: 187747 Cd Length: 338 Bit Score: 41.02 E-value: 1.17e-06
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| Name | Accession | Description | Interval | E-value | ||
| PLN00056 | PLN00056 | photosystem Q(B) protein; Provisional |
1-25 | 6.82e-08 | ||
photosystem Q(B) protein; Provisional Pssm-ID: 177687 Cd Length: 353 Bit Score: 44.73 E-value: 6.82e-08
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| Photosystem-II_D1 | cd09289 | D1 subunit of photosystem II (PS II); Photosystem II (PS II), D2 subunit. PS II is a ... |
1-16 | 1.17e-06 | ||
D1 subunit of photosystem II (PS II); Photosystem II (PS II), D2 subunit. PS II is a multi-subunit protein found in the photosynthetic membranes of plants, algae, and cyanobacteria. It utilizes light-induced electron transfer and water-splitting reactions to produce protons, electrons, and molecular oxygen. The protons generated are instrumental in ATP formation. Molecular dioxygen is released as a by-product. PS II can be described as containing two parts: the photochemical part and the catalytic part. The photochemical portion promotes the fast, efficient light-induced charge separation and stabilization that occur when light is absorbed by chlorophyll. The catalytic portion, where water is oxidized, involves a cluster of Mn ions close to a redox-active tyrosine residue. The Mn cluster and its ligands form a functional unit called the oxygen-evolving complex (OEC) or the water-oxidizing complex (WOC). The D1 and D2 subunits are a pair of interwined polypeptides. They contain all the cofactors involved directly in water oxidation and plastoquinone reduction. The D1 subunit contains the Mn cluster that constitutes the site of water oxidation. D1 and D2 are highly homologous and are also similar to the L and M proteins in bacterial photosynthetic reaction centers. Pssm-ID: 187747 Cd Length: 338 Bit Score: 41.02 E-value: 1.17e-06
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| psbA | CHL00003 | photosystem II protein D1 |
1-16 | 5.57e-05 | ||
photosystem II protein D1 Pssm-ID: 176948 Cd Length: 338 Bit Score: 36.40 E-value: 5.57e-05
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