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Conserved domains on  [gi|429892398|gb|AGA18741|]
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ribosomal protein S11, partial [Drosophila melanogaster]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00241 super family cl36531
40S ribosomal protein S11; Provisional
 1-151 9.24e-73

40S ribosomal protein S11; Provisional


The actual alignment was detected with superfamily member PTZ00241:

Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 214.95  E-value: 9.24e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   1 NERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIV 80
Cdd:PTZ00241   6 TERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKMKRTII 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 429892398  81 IRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrDVEHGDIVTIGECRPLSKTV***VLKVSKGQ---GAKKSFKKY 151
Cdd:PTZ00241  86 IRRDYLHYVKKYNRYEKRHKNIPVHCSPCF-DVKEGDIVVVGQCRPLSKTVRFNVLKVEKNEiigNVRKQFVLF 158
 
Name Accession Description Interval E-value
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 1-151 9.24e-73

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 214.95  E-value: 9.24e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   1 NERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIV 80
Cdd:PTZ00241   6 TERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKMKRTII 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 429892398  81 IRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrDVEHGDIVTIGECRPLSKTV***VLKVSKGQ---GAKKSFKKY 151
Cdd:PTZ00241  86 IRRDYLHYVKKYNRYEKRHKNIPVHCSPCF-DVKEGDIVVVGQCRPLSKTVRFNVLKVEKNEiigNVRKQFVLF 158
Ribosomal_S17_N pfam16205
Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher ...
 1-66 9.93e-36

Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher eukaryotic ribosomal subunit 17 proteins.


Pssm-ID: 435214  Cd Length: 67  Bit Score: 118.05  E-value: 9.93e-36
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 429892398    1 NERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRIL 66
Cdd:pfam16205   2 TEKAFQKQPGIFLNSKASLEGKKKKGRRYYKNVGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRIL 67
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 33-138 1.57e-33

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 113.55  E-value: 1.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   33 VGLGFKTPREAIDgtyiDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrD 112
Cdd:TIGR03630   1 IGIPVKPPEEECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCI-D 75

                          90       100
                  ....*....|....*....|....*.
gi 429892398  113 VEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:TIGR03630  76 VKVGDIVIIAETRPLSKTKSFVVLGK 101
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 64-138 8.26e-23

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 85.17  E-value: 8.26e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 429892398  64 RILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPvfRDVEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:cd00364    1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP--NECKVGDIVRIGECRPLSKTKRWVVVEI 73
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 60-138 1.56e-17

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 72.07  E-value: 1.56e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 429892398  60 RIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVfrDVEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:COG0186    5 RVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN--ECKVGDTVRIMETRPLSKTKRWRVVEI 81
 
Name Accession Description Interval E-value
PTZ00241 PTZ00241
40S ribosomal protein S11; Provisional
 1-151 9.24e-73

40S ribosomal protein S11; Provisional


Pssm-ID: 240326 [Multi-domain]  Cd Length: 158  Bit Score: 214.95  E-value: 9.24e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   1 NERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIV 80
Cdd:PTZ00241   6 TERAFQKQEGVFQNSKRLLKKKTSKGVRYWKKVGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVISTKMKRTII 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 429892398  81 IRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrDVEHGDIVTIGECRPLSKTV***VLKVSKGQ---GAKKSFKKY 151
Cdd:PTZ00241  86 IRRDYLHYVKKYNRYEKRHKNIPVHCSPCF-DVKEGDIVVVGQCRPLSKTVRFNVLKVEKNEiigNVRKQFVLF 158
Ribosomal_S17_N pfam16205
Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher ...
 1-66 9.93e-36

Ribosomal_S17 N-terminal; This short N-terminal region is found in a number of higher eukaryotic ribosomal subunit 17 proteins.


Pssm-ID: 435214  Cd Length: 67  Bit Score: 118.05  E-value: 9.93e-36
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 429892398    1 NERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRIL 66
Cdd:pfam16205   2 TEKAFQKQPGIFLNSKASLEGKKKKGRRYYKNVGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRIL 67
rps17p PRK08572
30S ribosomal protein S17P; Reviewed
 31-141 2.69e-35

30S ribosomal protein S17P; Reviewed


Pssm-ID: 236296 [Multi-domain]  Cd Length: 108  Bit Score: 118.09  E-value: 2.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398  31 RDVGLGFKTPREAIDgtyiDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVF 110
Cdd:PRK08572   1 RNIGLDVKPPEEECD----DPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVEREYLHYVPKYERYEKRRSRIHAHNPPCI 76

                         90       100       110
                 ....*....|....*....|....*....|.
gi 429892398 111 rDVEHGDIVTIGECRPLSKTV***VLKVSKG 141
Cdd:PRK08572  77 -DAKVGDKVKIAECRPLSKTKSFVVVEKKER 106
uS17_arch TIGR03630
ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal ...
 33-138 1.57e-33

ribosomal protein uS17, archaeal form; This model describes exclusively the archaeal ribosomal protein S17P. It excludes the homologous ribosomal protein S17 from bacteria, and is not intended for use on eukaryotic sequences, where some instances of ribosomal proteins S11 score above the trusted cutoff. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274687 [Multi-domain]  Cd Length: 102  Bit Score: 113.55  E-value: 1.57e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   33 VGLGFKTPREAIDgtyiDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrD 112
Cdd:TIGR03630   1 IGIPVKPPEEECN----DPKCPFHGHLKVRGQILEGVVVSDKMNKTVVVEREYLYYIRKYERYERRRSKIHAHNPPCI-D 75

                          90       100
                  ....*....|....*....|....*.
gi 429892398  113 VEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:TIGR03630  76 VKVGDIVIIAETRPLSKTKSFVVLGK 101
Ribosomal_uS17 cd00364
Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins ...
 64-138 8.26e-23

Ribosomal protein uS17; Ribosomal protein uS17 is one of the three primary assembly proteins (S4, S17 and S20) that stabilize the entire 5' rRNA domain and increase the global stability of the rRNA structure. uS17 is highly conserved in all three major phylogenetic divisions. In eukaryotes, the S17 ortholog of the cytoplasmic ribosome is called S11 as are those of the mitochondrial and chloroplast ribosomes. uS17 plays a critical role in both subunit assembly and translational fidelity.


Pssm-ID: 466775  Cd Length: 73  Bit Score: 85.17  E-value: 8.26e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 429892398  64 RILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPvfRDVEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:cd00364    1 KILIGVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDEP--NECKVGDIVRIGECRPLSKTKRWVVVEI 73
Ribosomal_S17 pfam00366
Ribosomal protein S17;
68-137 1.98e-22

Ribosomal protein S17;


Pssm-ID: 459784  Cd Length: 68  Bit Score: 84.36  E-value: 1.98e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429892398   68 GVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFrdVEHGDIVTIGECRPLSKTV***VLK 137
Cdd:pfam00366   1 GVVVSDKMDKTVVVRVERLVYHPKYKKYVKRTKKYHAHDENNE--CKVGDVVRIGECRPLSKTKRWVVVE 68
RpsQ COG0186
Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 ...
 60-138 1.56e-17

Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S17 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439956  Cd Length: 87  Bit Score: 72.07  E-value: 1.56e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 429892398  60 RIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVfrDVEHGDIVTIGECRPLSKTV***VLKV 138
Cdd:COG0186    5 RVRRKTLTGVVVSDKMDKTVVVEVERRVKHPLYGKYVRRSKKYHAHDENN--ECKVGDTVRIMETRPLSKTKRWRVVEI 81
uS17_bact TIGR03635
ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small ...
 64-130 3.70e-07

ribosomal protein uS17, bacterial form; This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274691  Cd Length: 72  Bit Score: 44.84  E-value: 3.70e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 429892398   64 RILTGVVRKAKMQRTIVIR--RDYLHfvRKYSRFEKRHRNMSVHcspvfrDVEH----GDIVTIGECRPLSKT 130
Cdd:TIGR03635   2 KTLQGVVVSDKMDKTVVVLveRRVKH--PLYKKIVKRTKKYHAH------DENNeckvGDVVRIIETRPLSKT 66
rpsQ PRK05610
30S ribosomal protein S17; Reviewed
 60-130 1.48e-06

30S ribosomal protein S17; Reviewed


Pssm-ID: 235532  Cd Length: 84  Bit Score: 43.60  E-value: 1.48e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 429892398  60 RIRGRILTGVVRKAKMQRTIVIR--RDYLHfvRKYSRFEKRHRNMSVHcspvfrdVEH-----GDIVTIGECRPLSKT 130
Cdd:PRK05610   3 RMPRKTLQGRVVSDKMDKTIVVLveRRVKH--PLYGKIVKRSKKYHAH-------DENneakiGDVVRIMETRPLSKT 71
rps17 CHL00142
ribosomal protein S17; Validated
 66-130 6.57e-05

ribosomal protein S17; Validated


Pssm-ID: 177064  Cd Length: 84  Bit Score: 39.26  E-value: 6.57e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 429892398  66 LTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHcspvfrDVEH----GDIVTIGECRPLSKT 130
Cdd:CHL00142   6 KIGIVVSNKMNKTIVVAVENRYKHPIYGKIITKTKKYLVH------DEENecniGDQVLIEETRPLSKT 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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