putative Cro-like protein [Bacteriophage APSE]
helix-turn-helix transcriptional regulator( domain architecture ID 10009724)
helix-turn-helix (HTH) transcriptional regulator containing a XRE (Xenobiotic Response Element) family HTH domain
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PHA00542 | PHA00542 | putative Cro-like protein |
5-86 | 3.01e-48 | |||
putative Cro-like protein : Pssm-ID: 106954 Cd Length: 82 Bit Score: 148.02 E-value: 3.01e-48
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Name | Accession | Description | Interval | E-value | |||
PHA00542 | PHA00542 | putative Cro-like protein |
5-86 | 3.01e-48 | |||
putative Cro-like protein Pssm-ID: 106954 Cd Length: 82 Bit Score: 148.02 E-value: 3.01e-48
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
26-75 | 8.73e-06 | |||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 39.42 E-value: 8.73e-06
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
27-75 | 2.88e-05 | |||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 38.30 E-value: 2.88e-05
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
27-75 | 1.37e-04 | |||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 36.36 E-value: 1.37e-04
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AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
26-74 | 1.89e-04 | |||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 36.92 E-value: 1.89e-04
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Name | Accession | Description | Interval | E-value | |||
PHA00542 | PHA00542 | putative Cro-like protein |
5-86 | 3.01e-48 | |||
putative Cro-like protein Pssm-ID: 106954 Cd Length: 82 Bit Score: 148.02 E-value: 3.01e-48
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HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
26-75 | 8.73e-06 | |||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 39.42 E-value: 8.73e-06
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
27-75 | 2.88e-05 | |||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 38.30 E-value: 2.88e-05
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
27-75 | 1.37e-04 | |||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 36.36 E-value: 1.37e-04
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AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
26-74 | 1.89e-04 | |||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 36.92 E-value: 1.89e-04
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COG5606 | COG5606 | Predicted DNA-binding protein, XRE-type HTH domain [General function prediction only]; |
25-59 | 2.61e-04 | |||
Predicted DNA-binding protein, XRE-type HTH domain [General function prediction only]; Pssm-ID: 444337 Cd Length: 105 Bit Score: 36.78 E-value: 2.61e-04
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
12-71 | 3.19e-04 | |||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 36.13 E-value: 3.19e-04
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HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
33-75 | 4.63e-04 | |||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 35.20 E-value: 4.63e-04
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HTH_37 | pfam13744 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. |
26-74 | 1.75e-03 | |||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. Pssm-ID: 433449 [Multi-domain] Cd Length: 80 Bit Score: 34.12 E-value: 1.75e-03
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Trp_repressor | pfam01371 | Trp repressor protein; This protein binds to tryptophan and represses transcription of the Trp ... |
25-54 | 2.15e-03 | |||
Trp repressor protein; This protein binds to tryptophan and represses transcription of the Trp operon. Pssm-ID: 426227 Cd Length: 86 Bit Score: 34.15 E-value: 2.15e-03
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ArsR | COG0640 | DNA-binding transcriptional regulator, ArsR family [Transcription]; |
25-54 | 2.44e-03 | |||
DNA-binding transcriptional regulator, ArsR family [Transcription]; Pssm-ID: 440405 [Multi-domain] Cd Length: 92 Bit Score: 34.09 E-value: 2.44e-03
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HTH_ARSR | cd00090 | Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
25-56 | 9.14e-03 | |||
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 32.27 E-value: 9.14e-03
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Blast search parameters | ||||
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